New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983781	62 (0.970)	4 (0.070)	4/240	NT	5.5%	coding (4426/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983820	79 (1.310)					coding (4465/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

ACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAA  >  NC_002947/5983673‑5983965                                                                                                                                                    |                                                                                                                                                  aCCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCg                                                                                                                                                  <  3:259390‑M2/149‑2 (MQ=255)   ccAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgct                                                                                                                                                <  3:380322‑M2/149‑4 (MQ=255)     aGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCTTCGCCTCCAATGCCGCGGCCAGCCTGCgctgg                                                                                                                                              <  6:309835‑M2/149‑6 (MQ=255)          gAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCa                                                                                                                                          >  4:403593/1‑148 (MQ=255)             gCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcg                                                                                                                                      >  7:70638/1‑149 (MQ=255)               cGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                                                    >  7:198030/1‑149 (MQ=255)                gAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACgcgc                                                                                                                                   >  5:239310/1‑149 (MQ=255)                gAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCACCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACgcgc                                                                                                                                   <  1:113302/149‑1 (MQ=255)                       gccgcTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAAccc                                                                                                                            <  7:256124/149‑1 (MQ=255)                           cTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGAcc                                                                                                                        <  2:86641/149‑1 (MQ=255)                              gcgTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTgg                                                                                                                     <  6:270584/149‑1 (MQ=255)                                gTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGgaa                                                                                                                   <  5:290160/149‑1 (MQ=255)                                   cGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGgaagaa                                                                                                                <  4:380322/149‑1 (MQ=255)                                    ggAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGaagaag                                                                                                               >  7:173905/1‑149 (MQ=255)                                    ggAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGaagaag                                                                                                               <  6:340935/149‑1 (MQ=255)                                     gAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGc                                                                                                              <  7:93533/149‑1 (MQ=255)                                         tGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGAtt                                                                                                          >  1:408016/1‑149 (MQ=255)                                         tGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGAt                                                                                                           >  1:412141/1‑148 (MQ=255)                                           gcgcgcAGTGCGCACTTGCAGGCGATGAATGCGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgctgg                                                                                                                                              <  7:259754‑M2/111‑6 (MQ=255)                                           gcgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTg                                                                                                         <  8:173905/148‑1 (MQ=255)                                           gcgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGc                                                                                                        >  8:272036/1‑149 (MQ=255)                                            cgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGcc                                                                                                       <  1:8695/149‑1 (MQ=255)                                             gcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCg                                                                                                      >  7:17601/1‑149 (MQ=255)                                             gcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCg                                                                                                      >  1:254089/1‑149 (MQ=255)                                               gcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGc                                                                                                    <  6:15741/149‑1 (MQ=255)                                                cAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGcc                                                                                                   >  5:57392/1‑149 (MQ=255)                                                     cgcACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                              <  6:174266/149‑1 (MQ=255)                                                        aCTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                                                    <  1:165192/108‑1 (MQ=255)                                                        aCTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                                                    >  2:165192/1‑108 (MQ=255)                                                             cAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATcc                                                                                       <  6:188030/148‑1 (MQ=255)                                                                   atgaatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGa                                                                                <  6:180725/149‑1 (MQ=255)                                                                      aatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACa                                                                              <  8:198030/148‑1 (MQ=255)                                                                      aatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACa                                                                              <  8:337362/148‑1 (MQ=255)                                                                       atgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTACCGGCCTGGAAGACATCCGCAACGACAg                                                                             <  2:412141/148‑1 (MQ=255)                                                                              gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTgg                                                                                                >  6:106445/1‑122 (MQ=255)                                                                              gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTgg                                                                                                <  5:106445/122‑1 (MQ=255)                                                                              gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                              >  4:252199/1‑124 (MQ=255)                                                                              gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                              <  3:252199/124‑1 (MQ=255)                                                                                 aGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGAc                                                                               >  7:156960/1‑136 (MQ=255)                                                                                 aGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGAc                                                                               <  8:156960/136‑1 (MQ=255)                                                                                      ccATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGc                                                                    <  3:99742/142‑1 (MQ=255)                                                                                      ccATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGc                                                                    >  4:99742/1‑142 (MQ=255)                                                                                       cATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                              >  5:97858/1‑115 (MQ=255)                                                                                       cATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                              <  6:97858/115‑1 (MQ=255)                                                                                             ccACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACa                                                            <  5:340485/143‑1 (MQ=255)                                                                                             ccACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACa                                                            >  6:340485/1‑143 (MQ=255)                                                                                              cACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCg                                                     <  7:272036/149‑1 (MQ=255)                                                                                               aCGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCgg                                                    >  5:181202/1‑149 (MQ=255)                                                                                                   gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAAc                                                                        >  7:329884/1‑125 (MQ=255)                                                                                                   gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAAc                                                                        <  8:329884/125‑1 (MQ=255)                                                                                                   gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGgcgc                                                >  3:74388/1‑149 (MQ=255)                                                                                                    aTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctc                                               <  5:38260‑M2/149‑101 (MQ=255)                                                                                                       agccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCg                                            >  3:208141/1‑149 (MQ=255)                                                                                                        gccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCaa                                                              <  4:316536/130‑1 (MQ=255)                                                                                                        gccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCaa                                                              >  3:316536/1‑130 (MQ=255)                                                                                                         ccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                                                    >  4:310087/1‑59 (MQ=255)                                                                                                         ccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                                                    <  3:310087/59‑1 (MQ=255)                                                                                                               gCTCCTGGGCATTGCCTCCAATGCCGCGGCCAGCCTGCgctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcgg                                                             <  2:392554‑M2/124‑87 (MQ=255)                                                                                                               gCTCCTGGGCATTGCCTCCAATGCCGCGGCCAGCCTGCgctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcgg                                                             >  1:392554‑M2/1‑38 (MQ=255)                                                                                                               gCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTgg                                    >  5:143917/1‑149 (MQ=255)                                                                                                                cTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGc                                   >  8:339603/1‑149 (MQ=255)                                                                                                                   cTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCCACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGcc                                  >  5:355527/1‑147 (MQ=255)                                                                                                                    tGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAg                               >  2:214446/1‑149 (MQ=255)                                                                                                                     gggCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGcc                                  >  1:119630/1‑145 (MQ=255)                                                                                                                     gggCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGcc                                  <  2:119630/145‑1 (MQ=255)                                                                                                                      ggCATCGCCTCCAATGCCGCGGCCAGCCTGCgctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctccatctgggtgcggatctg                             >  6:38260‑M2/1‑31 (MQ=255)                                                                                                                        cATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGt                           <  6:239310/149‑1 (MQ=255)                                                                                                                         aTCGCCACCAAAGCCGCGGCCAGCCTGAGCTCCCACAAACGCGCCAAACCCGACCTGGAAGAAGCGATTTCCCGCATGGAAGACAAAACCAACGACAGAGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGACCCAGGCCAAGCAGt                           >  6:81916/1‑148 (MQ=255)                                                                                                                          tCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCa                         <  8:17601/149‑1 (MQ=255)                                                                                                                             ccTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCt                                                                                                  <  7:209618/73‑1 (MQ=255)                                                                                                                             ccTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCt                                                                                                  >  8:209618/1‑73 (MQ=255)                                                                                                                             ccTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCAcc                       >  3:193752/1‑148 (MQ=255)                                                                                                                              cTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGa                     <  6:143917/149‑1 (MQ=255)                                                                                                                               tCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGAt                    >  6:233302/1‑149 (MQ=255)                                                                                                                                 cAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATg                   >  5:5307/1‑148 (MQ=255)                                                                                                                                 cAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATg                   >  3:389932/1‑148 (MQ=255)                                                                                                                                 cAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGc                  <  1:214446/149‑1 (MQ=255)                                                                                                                                  aaTGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGc                  >  3:374971/1‑148 (MQ=255)                                                                                                                                    tGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAAc               <  4:74388/149‑1 (MQ=255)                                                                                                                                      ccGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTc             <  2:408016/149‑1 (MQ=255)                                                                                                                                       cgcgGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTc             >  4:140465/1‑148 (MQ=255)                                                                                                                                         cgGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAg          <  4:259390/149‑1 (MQ=255)                                                                                                                                            ccAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCg       <  6:181202/149‑1 (MQ=255)                                                                                                                                             cAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCgg      >  3:270849/1‑149 (MQ=255)                                                                                                                                              aGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGt     >  7:288575/1‑149 (MQ=255)                                                                                                                                              aGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGt     <  5:233302/149‑1 (MQ=255)                                                                                                                                              aGCCTGCGCTGGCTCAAACGCGCCAAACCCCACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGt     <  6:355527/149‑1 (MQ=255)                                                                                                                                               gCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTg    <  8:70638/149‑1 (MQ=255)                                                                                                                                                ccTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTg    >  4:349396/1‑148 (MQ=255)                                                                                                                                                 cTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGaa  <  8:288575/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAA  >  NC_002947/5983673‑5983965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.