New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	568013 =	53 (0.830)	3 (0.050)	3/246	NT	6.0%	coding (1483/2835 nt)	uvrA	uvrABC excinuclease protein A
	?	NC_002947	568060 =	42 (0.680)					coding (1436/2835 nt)	uvrA	uvrABC excinuclease protein A

ACCACGATCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAG  >  NC_002947/567868‑568153                                                                                                                                                  |                                                                                                                                             accacGATCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGAt                                                                                                                                           <  7:96565/149‑1 (MQ=255) accacGATCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGAt                                                                                                                                           <  7:90886/149‑1 (MQ=255)  ccacGATCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATa                                                                                                                                          >  8:267843/1‑149 (MQ=255)       aTCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTg                                                                                                                                     <  5:48514/149‑1 (MQ=255)          aCCGTGTTGGCCAGGTCGCGCAAATGGGTGAGGGTGGCCTACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGTCGGTTCATCGAGGATGTACATCACGCCCACCTGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTgcg                                                                                                                                   <  8:303620/148‑1 (MQ=255)          aCCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTgcgc                                                                                                                                  <  7:365410/149‑1 (MQ=255)          aCCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTgcgc                                                                                                                                  >  7:238052/1‑149 (MQ=255)                  gCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCAccgc                                                                                                                          >  2:256238/1‑149 (MQ=255)                  gCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCAccgc                                                                                                                          >  5:285475/1‑149 (MQ=255)                    ccAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCAccgccg                                                                                                                        >  1:247237/1‑149 (MQ=255)                           gcgcAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAgg                                                                                                                  <  4:224141/148‑1 (MQ=255)                           gcgcAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAgg                                                                                                                  <  7:29261/148‑1 (MQ=255)                           gcgcAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAgg                                                                                                                  <  2:222791/148‑1 (MQ=255)                                  tGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGgc                                                                                                          <  7:267843/149‑1 (MQ=255)                                      tGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCACCGGACAGGGTGTCGGCGCTa                                                                                                      >  6:363016/1‑149 (MQ=255)                                        aGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTAc                                                                                                     >  5:324971/1‑148 (MQ=255)                                         gggTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCAccgcc                                                                                                                         >  3:154128/1‑127 (MQ=255)                                         gggTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCAccgcc                                                                                                                         <  4:154128/127‑1 (MQ=255)                                           gTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATc                                                                                                 <  8:238052/149‑1 (MQ=255)                                             acccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCa                                                                                               >  7:325151‑M1/102‑149 (MQ=255)                                              gCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAg                                                                                              <  1:256238/149‑1 (MQ=255)                                              gCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAg                                                                                              <  5:360073/149‑1 (MQ=255)                                               ccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg                                                                                             <  3:159048‑M1/50‑1 (MQ=255)                                               ccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg                                                                                             >  4:159048‑M1/100‑149 (MQ=255)                                                cAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAggg                                                                                            >  8:86617/1‑149 (MQ=255)                                                 aaCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTa                                                                                                      >  6:95441/1‑138 (MQ=255)                                                 aaCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTa                                                                                                      <  5:95441/138‑1 (MQ=255)                                                 aaCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTAAATCACCCCCACCAGACCAGCGACGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGt                                                                                           >  5:289270/1‑149 (MQ=255)                                                  aCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTc                                                                                          <  3:381646/149‑1 (MQ=255)                                                    aGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAg                                                                                        <  6:285475/149‑1 (MQ=255)                                                    aGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAg                                                                                        <  7:86617/149‑1 (MQ=255)                                                                  gcgTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGa                                                                          >  8:356487/1‑149 (MQ=255)                                                                                 gATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACt                                                           >  2:143430/1‑149 (MQ=255)                                                                                         gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg                                                                                             >  3:301415/1‑107 (MQ=255)                                                                                         gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg                                                                                             <  4:301415/107‑1 (MQ=255)                                                                                         gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt                                                   >  8:164796/1‑149 (MQ=255)                                                                                            cATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTc                                                 <  7:356487/148‑1 (MQ=255)                                                                                              tCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCg                                                >  2:60865/1‑147 (MQ=255)                                                                                                 aGGATGTACATCACCCCCACCAGA‑CAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGAtt                                          >  2:321101/1‑149 (MQ=255)                                                                                                  ggATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGAtt                                          >  6:114918/1‑149 (MQ=255)                                                                                                     tGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTcc                                       <  6:324971/149‑1 (MQ=255)                                                                                                       tACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt                                     >  5:1013/1‑149 (MQ=255)                                                                                                        aCATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt                                     >  5:182473/1‑148 (MQ=255)                                                                                                        aCATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt                                     >  5:236160/1‑148 (MQ=255)                                                                                                         cATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGa                                   <  4:7208/149‑1 (MQ=255)                                                                                                            cACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGa                                >  7:48647/1‑149 (MQ=255)                                                                                                             aCCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAt                               <  1:143430/149‑1 (MQ=255)                                                                                                               ccccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt                                                   >  5:321289/1‑127 (MQ=255)                                                                                                               ccccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt                                                   <  6:321289/127‑1 (MQ=255)                                                                                                                cccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAtttt                            >  7:193417/1‑149 (MQ=255)                                                                                                                 ccaccaGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAttttt                           >  6:308356/1‑149 (MQ=255)                                                                                                                   accagaccagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGc                         <  5:97671/149‑1 (MQ=255)                                                                                                                       gaccagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTGGGCGCTACGATCCAGGGTCAGGTAGTCGAGCCCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCcgcg                     >  1:320325/1‑149 (MQ=255)                                                                                                                        accagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGa                    >  2:146974/1‑149 (MQ=255)                                                                                                                          cagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGAt                                                                                                  >  4:66684/1‑69 (MQ=255)                                                                                                                          cagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGAt                                                                                                  <  3:66684/69‑1 (MQ=255)                                                                                                                                       gctggcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACg          <  6:182473/144‑1 (MQ=255)                                                                                                                                         tggcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCa   <  6:1013/149‑1 (MQ=255)                                                                                                                                           gcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAg  <  6:236160/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             ACCACGATCACCGTGTTGCCCAGGTCGCGCAAATGGTTGAGGGTGGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAG  >  NC_002947/567868‑568153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.