| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 568013 = | 53 (0.830) | 3 (0.050) | 3/246 | NT | 6.0% | coding (1483/2835 nt) | uvrA | uvrABC excinuclease protein A |
| ? | NC_002947 | 568060 = | 42 (0.680) | coding (1436/2835 nt) | uvrA | uvrABC excinuclease protein A | |||||
GGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATT > NC_002947/567912‑568202 | acccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCa > 7:325151‑M1/102‑149 (MQ=255) gCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAg < 5:360073/149‑1 (MQ=255) gCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAg < 1:256238/149‑1 (MQ=255) ccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg < 3:159048‑M1/50‑1 (MQ=255) ccttactggccggcgtggcgaaatcgcggcaaaaatcctcaaggaaatctgcgaacgacttcagttcctggtcaatgtcggtctcgactacctgaccctGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg > 4:159048‑M1/100‑149 (MQ=255) cAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAggg > 8:86617/1‑149 (MQ=255) aaCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTAAATCACCCCCACCAGACCAGCGACGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGt > 5:289270/1‑149 (MQ=255) aCAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTc < 3:381646/149‑1 (MQ=255) aGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAg < 6:285475/149‑1 (MQ=255) aGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAg < 7:86617/149‑1 (MQ=255) gcgTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGa > 8:356487/1‑149 (MQ=255) gATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACt > 2:143430/1‑149 (MQ=255) gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg < 4:301415/107‑1 (MQ=255) gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAgg > 3:301415/1‑107 (MQ=255) gTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt > 8:164796/1‑149 (MQ=255) cATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTc < 7:356487/148‑1 (MQ=255) tCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCg > 2:60865/1‑147 (MQ=255) aGGATGTACATCACCCCCACCAGA‑CAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGAtt > 2:321101/1‑149 (MQ=255) ggATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGAtt > 6:114918/1‑149 (MQ=255) tGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTcc < 6:324971/149‑1 (MQ=255) tACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt > 5:1013/1‑149 (MQ=255) aCATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt > 5:236160/1‑148 (MQ=255) aCATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCtt > 5:182473/1‑148 (MQ=255) cATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGa < 4:7208/149‑1 (MQ=255) cACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGa > 7:48647/1‑149 (MQ=255) aCCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAt < 1:143430/149‑1 (MQ=255) ccccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt < 6:321289/127‑1 (MQ=255) ccccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGt > 5:321289/1‑127 (MQ=255) cccACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAtttt > 7:193417/1‑149 (MQ=255) ccaccaGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGAttttt > 6:308356/1‑149 (MQ=255) accagaccagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGc < 5:97671/149‑1 (MQ=255) gaccagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTGGGCGCTACGATCCAGGGTCAGGTAGTCGAGCCCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCcgcg > 1:320325/1‑149 (MQ=255) accagCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGa > 2:146974/1‑149 (MQ=255) gctggcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACg < 6:182473/144‑1 (MQ=255) tggcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCa < 6:1013/149‑1 (MQ=255) gcGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAg < 6:236160/148‑1 (MQ=255) cctggatcgtagcgccgacaccctgtccggcggtgaagcgcaacgtatccAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAgg < 3:159048‑M2/99‑1 (MQ=255) cctggatcgtagcgccgacaccctgtccggcggtgaagcgcaacgtatccAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAgg > 4:159048‑M2/51‑149 (MQ=255) tggatcgtagcgccgacaccctgtccggcggtgaagcgcaacgtatccAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGt > 7:325151‑M2/49‑149 (MQ=255) ATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAg > 5:308356‑M1/1‑149 (MQ=255) cgcTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGAcc < 1:169946/147‑1 (MQ=255) cgcTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGAcc > 2:169946/1‑147 (MQ=255) gcTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCa > 5:376463/1‑147 (MQ=255) cTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAag < 1:321101/149‑1 (MQ=255) ttCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAag > 4:335277/1‑148 (MQ=255) cACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAagta < 5:114918/148‑1 (MQ=255) ccaccgGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGtt < 5:363016/146‑1 (MQ=255) cgccgGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGAGCAAAGTAGTTg > 5:271910/1‑149 (MQ=255) tCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGAt < 6:376463/149‑1 (MQ=255) tCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAATAGTTGCTGGCTTCACCGAt > 7:140548/1‑149 (MQ=255) ccGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGAt < 1:146974/148‑1 (MQ=255) ggCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCt < 2:18864/135‑1 (MQ=255) ggCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCt > 1:18864/1‑135 (MQ=255) gcgcTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCgg > 2:368437/1‑149 (MQ=255) gcTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGc > 7:201483/1‑148 (MQ=255) tACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGAcc < 4:39778/118‑1 (MQ=255) cGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAAtt > 3:393112/1‑149 (MQ=255) | GGCCAACAGGCGGTCGTTGTCGCGTTGATGAAGGCCGATGGACGGTTCATCGAGGATGTACATCACCCCCACCAGACCAGCGCCGATCTGGCTGGCGAGTCGGATACGTTGCGCTTCACCGCCGGACAGGGTGTCGGCGCTACGATCCAGGGTCAGGTAGTCGAGACCGACATTGACCAGGAACTGAAGTCGTTCGCAGATTTCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATT > NC_002947/567912‑568202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |