| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 967108 = | 55 (0.860) | 3 (0.050) | 3/234 | NT | 5.9% | coding (74/297 nt) | PP_0829 | hypothetical protein |
| ? | NC_002947 | 967158 = | 45 (0.760) | coding (124/297 nt) | PP_0829 | hypothetical protein | |||||
GCTTTGCCGCTTGGCTACTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAG > NC_002947/966965‑967250 | aaggtccacccccagagcacgaatgaccctcaatacagtgtcaaaacgaggcttcgcgccagggctcagcgccttgtacaggctttctctacccagcccactctccgtagcaatatgtgtcatgccccgtgcacgagcgatatgGCCaa > 1:311483‑M1/145‑149 (MQ=255) ccGCTTGGCTACTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTa < 5:355380/148‑1 (MQ=255) ccGCTTGGCTACTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTAt < 1:13692/149‑1 (MQ=255) ttGGCTACTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTAt > 2:109543/1‑145 (MQ=255) cTGCCACCCAAGCCGCCGACATCCATAGCAAGAAAGCTGATGAATGAGATGAAATGAGCGAAAAATTGAT‑CCCTTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGa < 5:227173/148‑1 (MQ=255) cTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGa < 1:154361/148‑1 (MQ=255) ccACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATAcc > 1:271575/1‑149 (MQ=255) aaGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGt > 1:203184/1‑124 (MQ=255) aaGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGt < 2:203184/124‑1 (MQ=255) aGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGaaa < 1:407869/149‑1 (MQ=255) gccgACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCAt > 7:136840/1‑149 (MQ=255) cgACATCCAAAGCCAGAAAGCTGCTGAAGGAGATTAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTc < 1:37562/149‑1 (MQ=255) cgACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTc < 1:109543/149‑1 (MQ=255) ccAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCAc > 3:242495/1‑149 (MQ=255) cAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACt > 8:236980/1‑149 (MQ=255) cAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACt > 1:9972/1‑149 (MQ=255) cAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACt > 4:300476/1‑149 (MQ=255) aaacgaggcttcgcgccagggctcagcgccttgtacaggctttctctacccagcccactctccgtagcaatatgtgtcatgccccgtgcacgagcgatatgGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTg > 3:338204‑M1/102‑149 (MQ=255) aGCCAGAAAGCTGCTGAATGATATGAAATGAGCTAAAAATTGAT‑CCCGTTTTATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGTCGATACCGAGGAAATCATTCGAGCACTTgg < 5:374987/149‑1 (MQ=255) ccAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTACCCAAGTCCTATCAg > 1:85816/1‑114 (MQ=255) ccAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAg < 2:85816/113‑1 (MQ=255) aGAAAGCTGCTGAAGGAGATGAAATGAGCGTAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCa > 1:34620/1‑148 (MQ=255) aGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGa > 5:103126/1‑127 (MQ=255) aGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGa < 6:103126/127‑1 (MQ=255) aGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCa > 1:312489/1‑148 (MQ=255) gAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCata < 8:136840/149‑1 (MQ=255) aggcttcgcgccagggctcagcgccttgtacaggctttctctacccagcccactctccgtagcaatatgtgtcatgccccgtgcacgagcgatatgGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTgg < 8:158408‑M1/49‑1 (MQ=255) aggcttcgcgccagggctcagcgccttgtacaggctttctctacccagcccactctccgtagcaatatgtgtcatgccccgtgcacgagcgatatgGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTgg > 7:158408‑M1/97‑145 (MQ=255) aGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCg < 2:34620/149‑1 (MQ=255) ctgctgAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCt < 2:271575/149‑1 (MQ=255) gctgAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGc > 2:176925/1‑90 (MQ=255) gctgAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGc < 1:176925/90‑1 (MQ=255) ctgAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGa > 1:25037/1‑128 (MQ=255) ctgAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGa < 2:25037/128‑1 (MQ=255) gAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGc > 3:68143/1‑143 (MQ=255) gAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGc < 4:68143/143‑1 (MQ=255) aaGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATAAGTGAATACCTTAGACAAGTGCTATCAGATGTCGATAACGAGGAAATAATTCGAGAACTTGTCCATATAGGTCGTGc > 4:285646/1‑148 (MQ=255) gagaTGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACgg < 2:312489/149‑1 (MQ=255) agaTGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACggg < 4:242495/149‑1 (MQ=255) aaTGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg < 2:9972/148‑1 (MQ=255) cGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACata > 3:218588/1‑149 (MQ=255) gAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACatat > 3:68881/1‑149 (MQ=255) aaaTTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAg > 5:129045/1‑106 (MQ=255) aaaTTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAg < 6:129045/106‑1 (MQ=255) ttGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg > 8:235017/1‑135 (MQ=255) ttGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg < 7:235017/135‑1 (MQ=255) cTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa < 3:300476/149‑1 (MQ=255) gttgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc < 4:218588/148‑1 (MQ=255) tgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACTGAGAGTGGGCt > 1:311331/1‑133 (MQ=255) tgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACTGAGAGTGGGCt < 2:311331/133‑1 (MQ=255) cagcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCTCTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTAc > 8:18608/1‑148 (MQ=255) gcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAg < 7:236980/149‑1 (MQ=255) cGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGt > 4:351501/1‑130 (MQ=255) cGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGt < 3:351501/130‑1 (MQ=255) cAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGc > 6:84492/1‑149 (MQ=255) aaTCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGc < 8:21945/116‑1 (MQ=255) aaTCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGc > 7:21945/1‑116 (MQ=255) gTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGgc > 4:64636/1‑149 (MQ=255) gAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGgcgc > 7:194569/1‑149 (MQ=255) tACCTTAGCCAAGTGCAATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGaa < 3:285646/149‑1 (MQ=255) aCCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAg > 8:120018/1‑149 (MQ=255) cTTATCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa < 8:391686/115‑1 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACgg > 6:425677/1‑94 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACgg < 5:425677/94‑1 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa > 7:391686/1‑115 (MQ=255) | GCTTTGCCGCTTGGCTACTGCCACCCAAGCCGCCGACATCCAAAGCCAGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGAT‑CCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAG > NC_002947/966965‑967250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |