| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 967108 = | 55 (0.860) | 3 (0.050) | 3/234 | NT | 5.9% | coding (74/297 nt) | PP_0829 | hypothetical protein |
| ? | NC_002947 | 967158 = | 45 (0.760) | coding (124/297 nt) | PP_0829 | hypothetical protein | |||||
AGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGT > NC_002947/967012‑967306 | aGAAAGCTGCTGAAGGAGATGAAATGAGCGTAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCa > 1:34620/1‑148 (MQ=255)aGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCa > 1:312489/1‑148 (MQ=255) gAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCata < 8:136840/149‑1 (MQ=255) aGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCg < 2:34620/149‑1 (MQ=255) ctgctgAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCt < 2:271575/149‑1 (MQ=255) gAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGc > 3:68143/1‑143 (MQ=255) gAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGc < 4:68143/143‑1 (MQ=255) aaGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATAAGTGAATACCTTAGACAAGTGCTATCAGATGTCGATAACGAGGAAATAATTCGAGAACTTGTCCATATAGGTCGTGc > 4:285646/1‑148 (MQ=255) gagaTGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACgg < 2:312489/149‑1 (MQ=255) agaTGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACggg < 4:242495/149‑1 (MQ=255) aaTGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg < 2:9972/148‑1 (MQ=255) cGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACata > 3:218588/1‑149 (MQ=255) gAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACatat > 3:68881/1‑149 (MQ=255) ttGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg < 7:235017/135‑1 (MQ=255) ttGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATg > 8:235017/1‑135 (MQ=255) cTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa < 3:300476/149‑1 (MQ=255) gttgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc < 4:218588/148‑1 (MQ=255) tgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACTGAGAGTGGGCt < 2:311331/133‑1 (MQ=255) tgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACTGAGAGTGGGCt > 1:311331/1‑133 (MQ=255) cagcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCTCTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTAc > 8:18608/1‑148 (MQ=255) gcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAg < 7:236980/149‑1 (MQ=255) cGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGt > 4:351501/1‑130 (MQ=255) cGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGt < 3:351501/130‑1 (MQ=255) cAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGc > 6:84492/1‑149 (MQ=255) aaTCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGc < 8:21945/116‑1 (MQ=255) aaTCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGc > 7:21945/1‑116 (MQ=255) gTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGgc > 4:64636/1‑149 (MQ=255) gAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGgcgc > 7:194569/1‑149 (MQ=255) tACCTTAGCCAAGTGCAATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGaa < 3:285646/149‑1 (MQ=255) aCCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAg > 8:120018/1‑149 (MQ=255) cTTATCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa < 8:391686/115‑1 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACgg < 5:425677/94‑1 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACgg > 6:425677/1‑94 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGaaa > 7:391686/1‑115 (MQ=255) ccaagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCt > 7:158408‑M2/50‑145 (MQ=255) ccaagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCt < 8:158408‑M2/96‑1 (MQ=255) CCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGtt < 8:115537‑M1/149‑1 (MQ=255) caagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGttt > 3:338204‑M2/49‑149 (MQ=255) AAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGtttt > 3:64636‑M1/1‑149 (MQ=255) AGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCTCTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTg > 7:18608‑M1/1‑149 (MQ=255) GTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTg < 3:270946‑M1/148‑1 (MQ=255) GCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGac > 4:270946‑M1/1‑148 (MQ=255) aTCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGt > 7:17675/1‑85 (MQ=255) aTCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGt < 8:17675/85‑1 (MQ=255) aTCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTg > 8:347426/1‑149 (MQ=255) aTCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTg > 8:61446/1‑149 (MQ=255) tCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACt < 7:120018/147‑1 (MQ=255) tCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACt < 8:194569/147‑1 (MQ=255) aTGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTg < 7:347426/149‑1 (MQ=255) aTACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGt > 8:249756/1‑148 (MQ=255) ccGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCAtt > 1:77844/1‑149 (MQ=255) gAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCg > 1:177329/1‑149 (MQ=255) gAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCg > 8:149973/1‑149 (MQ=255) aGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGt < 7:115537/149‑1 (MQ=255) ggAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTg < 7:249756/149‑1 (MQ=255) aaTCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGctc > 1:100837/1‑149 (MQ=255) aTTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTgg < 2:177329/148‑1 (MQ=255) gAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTTAGGGTCATTCGTGCTCTGGGGGt < 7:61446/148‑1 (MQ=255) gAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGt < 2:100837/148‑1 (MQ=255) gAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGt < 5:84492/148‑1 (MQ=255) ttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCtt > 1:311483‑M2/6‑149 (MQ=255) cATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGt > 3:199060/1‑149 (MQ=255) cATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGt > 1:285526/1‑149 (MQ=255) | AGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGT > NC_002947/967012‑967306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |