New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059076	47 (0.730)	4 (0.070)	4/242	NT	8.4%	coding (116/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059088	43 (0.710)					coding (128/1404 nt)	PP_5311	signal transduction protein

TTTAAAAGATACAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAG  >  NC_002947/6058935‑6059221                                                                                                                                              |                                                                                                                                                  tttAAAAGATACAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTcg                                                                                                                                            >  1:339605/1‑149 (MQ=255)     aaaGATACAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCgg                                                                                                                                         <  4:400758/148‑1 (MQ=255)     aaaGATACAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCgg                                                                                                                                         <  4:394410/148‑1 (MQ=255)            cAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTgcagg                                                                                                                                  >  7:211838‑M2/1‑143 (MQ=255)            cAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCCGCGGCTTCGCGGGTgcagg                                                                                                                                  >  2:177803‑M2/1‑143 (MQ=255)              gTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTg                                                                                                                               >  3:288804/1‑149 (MQ=255)               tGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGt                                                                                                                              >  2:164943/1‑149 (MQ=255)                 gATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTc                                                                                                                             <  8:165477/148‑1 (MQ=255)                     cGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtct                                                                                                                        <  1:164943/149‑1 (MQ=255)                      ggACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCCGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtctc                                                                                                                       >  6:91094/1‑149 (MQ=255)                           aTGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTcgacga                                                                                                                  >  5:165147/1‑149 (MQ=255)                            tGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTcgcg                                                                                                                                          <  1:388042/124‑1 (MQ=255)                            tGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTcgcg                                                                                                                                          >  2:388042/1‑124 (MQ=255)                              aCTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTcgacgac                                                                                                                 >  7:96950/1‑147 (MQ=255)                               cTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtc                                                                                                                         <  1:86785/138‑1 (MQ=255)                               cTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtc                                                                                                                         >  2:86785/1‑138 (MQ=255)                                        cccTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGcc                                                                                                     >  7:221102/1‑149 (MQ=255)                                         ccTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTcc                                                                                                                            <  8:235558/125‑1 (MQ=255)                                          cTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCacccgcgaagccgcaggcaggtgcga                                                                                                                         <  3:299548‑M1/127‑27 (MQ=255)                                          cTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCacccgcgaagccgcaggcaggtgcga                                                                                                                         >  4:299548‑M1/1‑101 (MQ=255)                                           tGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGgc                                                                                                        <  2:383518/143‑1 (MQ=255)                                           tGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGgc                                                                                                        >  1:383518/1‑143 (MQ=255)                                             gACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCAt                                                                                                <  6:165147/149‑1 (MQ=255)                                              acacCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATg                                                                                               <  4:288804/149‑1 (MQ=255)                                              acacCGCAACCCCACACGCCCCCTCCGCCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATg                                                                                               <  7:216526/149‑1 (MQ=255)                                                  cGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACCCTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGCGGTCGGCGCCCTCATGGTGc                                                                                           >  5:200147/1‑149 (MQ=255)                                                   gCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCt                                                                                          <  2:339605/149‑1 (MQ=255)                                                        cccACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTcc                                                                                     >  4:268131/1‑149 (MQ=255)                                                          cacaCGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCg                                                                                   >  7:30169/1‑149 (MQ=255)                                                          cacaCGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCg                                                                                   >  5:105731/1‑149 (MQ=255)                                                             acGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCag                                                                                >  4:341913/1‑149 (MQ=255)                                                                  cccTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCacccgcgaagccgcaggcaggtgcgag                                                                                                                        <  6:404954‑M1/104‑28 (MQ=255)                                                                  cccTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCacccgcgaagccgcaggcaggtgcgag                                                                                                                        >  5:404954‑M1/1‑77 (MQ=255)                                                                  cccTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCa                                                                           >  8:360343/1‑149 (MQ=255)                                                                        gTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACctgct                                                                     >  7:197619/1‑149 (MQ=255)                                                                                       ctCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGAcc                                                                <  4:274205/139‑1 (MQ=255)                                                                                       ctCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGAcc                                                                >  3:274205/1‑139 (MQ=255)                                                                                          gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTgg                                                    <  6:105731/148‑1 (MQ=255)                                                                                          gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTgg                                                    <  8:30169/148‑1 (MQ=255)                                                                                          gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGc                                                   >  2:100599/1‑149 (MQ=255)                                                                                             aaaCTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGa                                                <  1:100599/149‑1 (MQ=255)                                                                                              aaCTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAg                                               <  5:91094/149‑1 (MQ=255)                                                                                                 tCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCt                                             >  2:27765/1‑148 (MQ=255)                                                                                                          ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGgcgc                                   <  1:86935/149‑1 (MQ=255)                                                                                                          ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGgcg                                    >  2:86935/1‑148 (MQ=255)                                                                                                          ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCAGAGCTGACCGGgcg                                    >  8:296908/1‑148 (MQ=255)                                                                                                                      tggtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGAccgcc                       <  7:360343/149‑1 (MQ=255)                                                                                                                        gtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCaga                                                                               >  5:152677/1‑91 (MQ=255)                                                                                                                        gtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCaga                                                                               <  6:152677/91‑1 (MQ=255)                                                                                                                           gAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTc                  >  8:125567/1‑149 (MQ=255)                                                                                                                                cTCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggaggg                                                          <  6:404954‑M2/104‑78 (MQ=255)                                                                                                                                cTCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggaggg                                                          >  5:404954‑M2/1‑27 (MQ=255)                                                                                                                                 tCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccag                                  <  3:299548‑M2/127‑102 (MQ=255)                                                                                                                                 tCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccag                                  >  4:299548‑M2/1‑26 (MQ=255)                                                                                                                                     aCCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCgcgc        >  4:374579/1‑149 (MQ=255)                                                                                                                                     aCCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCgcgc        >  4:305255/1‑149 (MQ=255)                                                                                                                                       ctgcctgcGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCt      >  1:86607/1‑149 (MQ=255)                                                                                                                                          cctgcacccgcgaagccgcgggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccagggcaacttcagtcatggtccgtatccactg    >  2:177803‑M1/1‑5 (MQ=255)                                                                                                                                          cctgcacccgcgaagccgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccagggcaacttcagtcatggtccgtatccactg    >  7:211838‑M1/1‑5 (MQ=255)                                                                                                                                             gcGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAg  >  3:152100/1‑147 (MQ=255)                                                                                                                                              |                                                                                                                                                  TTTAAAAGATACAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAG  >  NC_002947/6058935‑6059221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.