New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059076	47 (0.730)	4 (0.070)	4/242	NT	8.4%	coding (116/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059088	43 (0.710)					coding (128/1404 nt)	PP_5311	signal transduction protein

CAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTCGACAA  >  NC_002947/6058946‑6059235                                                                                                                                               |                                                                                                                                                    cAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTgcagg                                                                                                                                                >  7:211838‑M2/1‑143 (MQ=255) cAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCCGCGGCTTCGCGGGTgcagg                                                                                                                                                >  2:177803‑M2/1‑143 (MQ=255)   gTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTg                                                                                                                                             >  3:288804/1‑149 (MQ=255)    tGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGt                                                                                                                                            >  2:164943/1‑149 (MQ=255)      gATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTc                                                                                                                                           <  8:165477/148‑1 (MQ=255)          cGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtct                                                                                                                                      <  1:164943/149‑1 (MQ=255)           ggACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCCGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtctc                                                                                                                                     >  6:91094/1‑149 (MQ=255)                aTGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTcgacga                                                                                                                                >  5:165147/1‑149 (MQ=255)                   aCTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTcgacgac                                                                                                                               >  7:96950/1‑147 (MQ=255)                    cTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtc                                                                                                                                       <  1:86785/138‑1 (MQ=255)                    cTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTtc                                                                                                                                       >  2:86785/1‑138 (MQ=255)                             cccTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGcc                                                                                                                   >  7:221102/1‑149 (MQ=255)                              ccTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTcc                                                                                                                                          <  8:235558/125‑1 (MQ=255)                                tGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGgc                                                                                                                      <  2:383518/143‑1 (MQ=255)                                tGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGgc                                                                                                                      >  1:383518/1‑143 (MQ=255)                                  gACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCAt                                                                                                              <  6:165147/149‑1 (MQ=255)                                   acacCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATg                                                                                                             <  4:288804/149‑1 (MQ=255)                                   acacCGCAACCCCACACGCCCCCTCCGCCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATg                                                                                                             <  7:216526/149‑1 (MQ=255)                                       cGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACCCTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGCGGTCGGCGCCCTCATGGTGc                                                                                                         >  5:200147/1‑149 (MQ=255)                                        gCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCt                                                                                                        <  2:339605/149‑1 (MQ=255)                                             cccACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTcc                                                                                                   >  4:268131/1‑149 (MQ=255)                                               cacaCGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCg                                                                                                 >  7:30169/1‑149 (MQ=255)                                               cacaCGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCg                                                                                                 >  5:105731/1‑149 (MQ=255)                                                  acGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCag                                                                                              >  4:341913/1‑149 (MQ=255)                                                       cccTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCa                                                                                         >  8:360343/1‑149 (MQ=255)                                                             gTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACctgct                                                                                   >  7:197619/1‑149 (MQ=255)                                                                            ctCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGAcc                                                                              <  4:274205/139‑1 (MQ=255)                                                                            ctCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGAcc                                                                              >  3:274205/1‑139 (MQ=255)                                                                               gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTgg                                                                  <  8:30169/148‑1 (MQ=255)                                                                               gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTgg                                                                  <  6:105731/148‑1 (MQ=255)                                                                               gACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGc                                                                 >  2:100599/1‑149 (MQ=255)                                                                                  aaaCTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGa                                                              <  1:100599/149‑1 (MQ=255)                                                                                   aaCTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAg                                                             <  5:91094/149‑1 (MQ=255)                                                                                      tCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCt                                                           >  2:27765/1‑148 (MQ=255)                                                                                               ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGgcgc                                                 <  1:86935/149‑1 (MQ=255)                                                                                               ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGgcg                                                  >  2:86935/1‑148 (MQ=255)                                                                                               ccTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCAGAGCTGACCGGgcg                                                  >  8:296908/1‑148 (MQ=255)                                                                                                           tggtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGAccgcc                                     <  7:360343/149‑1 (MQ=255)                                                                                                             gtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCaga                                                                                             <  6:152677/91‑1 (MQ=255)                                                                                                             gtCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCaga                                                                                             >  5:152677/1‑91 (MQ=255)                                                                                                                gAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTc                                >  8:125567/1‑149 (MQ=255)                                                                                                                     cTCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggaggg                                                                        >  5:404954‑M2/1‑27 (MQ=255)                                                                                                                     cTCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggaggg                                                                        <  6:404954‑M2/104‑78 (MQ=255)                                                                                                                      tCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccag                                                <  3:299548‑M2/127‑102 (MQ=255)                                                                                                                      tCGCACCTGCCTGCGGCTTCGCGGGTgcaggcaggtgcgagtgttcgaccacctggcggtagggcacgccgagtttgtcgagcagcagcctgatgacggagggggcgtgtggggttgcggtgtccag                                                >  4:299548‑M2/1‑26 (MQ=255)                                                                                                                          aCCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCgcgc                      >  4:305255/1‑149 (MQ=255)                                                                                                                          aCCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCgcgc                      >  4:374579/1‑149 (MQ=255)                                                                                                                            ctgcctgcGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCt                    >  1:86607/1‑149 (MQ=255)                                                                                                                                  gcGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAg                >  3:152100/1‑147 (MQ=255)                                                                                                                                     gCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGAt           >  1:214133/1‑149 (MQ=255)                                                                                                                                         cgcgGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTc       <  8:221102/149‑1 (MQ=255)                                                                                                                                          gcgGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTc       <  8:197619/148‑1 (MQ=255)                                                                                                                                          gcgGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTc       <  4:152100/148‑1 (MQ=255)                                                                                                                                              gTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTCGACaa  <  3:305255/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CAGTGGATACGGACCATGACTGAAGTTGCCCTGGACACCGCAACCCCACACGCCCCCTCCGTCATCAGGCTGCTGCTCGACAAACTCGGCGTGCCCTACCGCCAGGTGGTCGAACACTCGCACCTGCCTGCGGCTTCGCGGGTGCAGGCTGTCCTTCTCGACGACGAGGTCGGCGCCCTCATGGTGCTGTTCCCGCAGAGCCACCTGCTGGACCTCAACCGGCTGGCCGAGCTGACCGGGCGCAAGCTGACCGCCGTGTCGGTGCCGCGCCTGAAGCAGATGCTCGACAA  >  NC_002947/6058946‑6059235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.