New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 53224176 (1.190)4 (0.070) 3/240 NT 5.2% intergenic (+23/‑130) PP_0439/PP_t01 hypothetical protein/tRNA‑Tyr
?NC_002947 = 532271 73 (1.210)intergenic (+53/‑100) PP_0439/PP_t01 hypothetical protein/tRNA‑Tyr

CTGGACCAAACGGTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAGGGGACGGACTGTAAATCC  >  NC_002947/532126‑532412
                                                                                                                                                 |                                                                                                                                             
cTGGACCAAACGGTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaa                                                                                                                                            >  2:21100‑M2/1‑146 (MQ=255)
      cAAACGGTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGgtg                                                                                                                                      <  1:404098/149‑1 (MQ=255)
        aaCGGTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGgtgt                                                                                                                                     >  4:24629/1‑148 (MQ=255)
           ggTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCa                                                                                                                                   >  1:162019/1‑147 (MQ=255)
           ggTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCa                                                                                                                                   >  7:376908/1‑147 (MQ=255)
                tctTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAagcagc                                                                                                                            >  1:219133/1‑149 (MQ=255)
                 ctTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAagcagc                                                                                                                            >  4:103513/1‑148 (MQ=255)
                       tctTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGtt                                                                                                                      >  4:407994/1‑148 (MQ=255)
                         tttCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCa                                                                                                                   <  4:331059/149‑1 (MQ=255)
                           tCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcg                                                                                                                                         <  3:87639‑M2/125‑7 (MQ=255)
                           tCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcg                                                                                                                                         >  4:87639‑M2/1‑119 (MQ=255)
                           tCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAg                                                                                                                  <  5:314314/148‑1 (MQ=255)
                            ccAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGAt                                                                                                                >  6:251192/1‑149 (MQ=255)
                            ccAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGAt                                                                                                                >  1:97785/1‑149 (MQ=255)
                             cAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcg                                                                                                                                         >  7:89861‑M2/1‑117 (MQ=255)
                             cAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAAAAGCTTGATAGAATGGCGCCCGCTACACAGGGAACACCACTCAGCTGGAAGAACTCgaagcg                                                                                                                                         <  8:89861‑M2/123‑7 (MQ=255)
                              aaTGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGAttt                                                                                                              <  2:219133/149‑1 (MQ=255)
                               aTGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATttg                                                                                                             <  2:386222/149‑1 (MQ=255)
                                  aTTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGTTttgat                                                                                                           <  4:248258/148‑1 (MQ=255)
                                    ttCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAagc                                                                                                                               >  4:380696/1‑126 (MQ=255)
                                    ttCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAagc                                                                                                                               <  3:380696/126‑1 (MQ=255)
                                      cAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcg                                                                                                                                         <  4:284497‑M2/114‑7 (MQ=255)
                                      cAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcg                                                                                                                                         >  3:284497‑M2/1‑108 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGAGGATTAGCTTGATAGAATGGCGCCCGCTTCACTGGGAACACCACTGAGGTGGTAGATCTGGATGAGGTGTCAACGCAGCTAAGTTTCAGATttgattgata                                                                                                      >  8:385359/1‑146 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGg                                                                                                                                              >  8:387113‑M2/1‑107 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGg                                                                                                                                              <  7:387113‑M2/108‑2 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATttga                                                                                                            >  7:170120/1‑142 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATttga                                                                                                            <  8:170120/142‑1 (MQ=255)
                                       aaaGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGaaa                                                                                                      >  8:335579/1‑148 (MQ=255)
                                           aCTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAAtt                                                                                                 <  2:175114/149‑1 (MQ=255)
                                            cTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATATCTTGATAGTATGGCGCCCGCTTCACAGTGAACTCCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAAttt                                                                                                <  4:79331/149‑1 (MQ=255)
                                             ttAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAAttt                                                                                                >  1:113034/1‑148 (MQ=255)
                                               aaaaCATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGa                                                                                              >  6:137990/1‑148 (MQ=255)
                                               aaaaCATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGa                                                                                              <  3:224391/148‑1 (MQ=255)
                                                aaaCATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGaa                                                                                             <  4:372169/148‑1 (MQ=255)
                                                  aCATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTc                                                                                                                                    >  8:204665/1‑107 (MQ=255)
                                                  aCATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTc                                                                                                                                    <  7:204665/107‑1 (MQ=255)
                                                        aaTTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCaaa                                                                                                                                 <  4:335896/104‑1 (MQ=255)
                                                        aaTTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCaaa                                                                                                                                 >  3:335896/1‑104 (MQ=255)
                                                            attTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAg                                                                                                                        >  4:26134/1‑109 (MQ=255)
                                                            attTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAg                                                                                                                        <  3:26134/109‑1 (MQ=255)
                                                             ttttCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGaca                                                                                <  6:31409/148‑1 (MQ=255)
                                                                tCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTa                                                                             <  5:251192/148‑1 (MQ=255)
                                                                    ccAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACg                                                                        <  3:407994/149‑1 (MQ=255)
                                                                     cAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACgg                                                                       >  8:179944/1‑149 (MQ=255)
                                                                     cAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACgg                                                                       >  7:357477/1‑149 (MQ=255)
                                                                      aGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGc                                                                      <  3:24629/149‑1 (MQ=255)
                                                                       gggTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCa                                                                     <  7:335579/149‑1 (MQ=255)
                                                                       gggTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCa                                                                     <  2:113034/149‑1 (MQ=255)
                                                                            ttGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACa                                                                 >  3:335208/1‑148 (MQ=255)
                                                                              gCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAAttt                                                                                                >  1:53080/1‑115 (MQ=255)
                                                                              gCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAAttt                                                                                                <  2:53080/115‑1 (MQ=255)
                                                                               cAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATa                                                             <  8:376908/149‑1 (MQ=255)
                                                                                aaCTGACGAATAGCTTGATAGAATGGCGCCTGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGgtgt                                                                                                                                     >  1:36192/1‑76 (MQ=255)
                                                                                aaCTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGgtgt                                                                                                                                     <  2:36192/76‑1 (MQ=255)
                                                                                aaCTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACaaa                                                               >  8:104054/1‑146 (MQ=255)
                                                                                       gAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGAAGGAAGACAAATAGAATGcct                                                     >  2:341925/1‑148 (MQ=255)
                                                                                          tAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGcc                                                  <  5:137990/149‑1 (MQ=255)
                                                                                             cTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACg                                                                                       >  7:248594/1‑109 (MQ=255)
                                                                                             cTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACg                                                                                       <  8:248594/109‑1 (MQ=255)
                                                                                                gATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCt                                            >  1:363298/1‑149 (MQ=255)
                                                                                                    gAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGacac                                                                               <  3:50980/110‑1 (MQ=255)
                                                                                                    gAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGacac                                                                               >  4:50980/1‑110 (MQ=255)
                                                                                                    gAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGa                                         <  7:104054/148‑1 (MQ=255)
                                                                                                           gcCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTcc                                 >  2:354196/1‑149 (MQ=255)
                                                                                                            cccGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcgggcgccattctatcaagctattcgtcagttgcaataccctggcagaaaataattttatgttttaagtctttgaaatcattggaaagagccaagagcaccgtttgg                                <  4:199481‑M2/149‑112 (MQ=255)
                                                                                                             ccGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcgggcgccattctatcaagctattcgtcagttgcaataccctggcagaaaataattttatgttttaagtctttgaaatcattggaaagagccaagagcaccgtttggt                               <  1:133843‑M2/149‑113 (MQ=255)
                                                                                                             ccGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGgaagcgggcgccattctatcaagctattcgtcagttgcaataccctggcagaaaataattttatgttttaagtctttgaaatcattggaaagagccaagagcaccgtttggt                               <  8:46470‑M2/149‑113 (MQ=255)
                                                                                                             ccGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGATGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTccc                                >  1:77780/1‑148 (MQ=255)
                                                                                                              cGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGa                              <  8:357477/149‑1 (MQ=255)
                                                                                                                   cacaGGGAACACCACTCAGGTGGTAGAACTGgaagcgggcgccattctatcaagctattcgtcagttgcaataccctggcagaaaataattttatgttttaagtctttgaaatcattggaaagagccaagagcaccgtttggtccagc                          >  3:199481‑M2/1‑31 (MQ=255)
                                                                                                                   cacaGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCg                                                     <  1:263819/121‑1 (MQ=255)
                                                                                                                   cacaGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCg                                                     >  2:263819/1‑121 (MQ=255)
                                                                                                                   cacaGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGt                         >  5:274943/1‑149 (MQ=255)
                                                                                                                    acaGGGAACACCACTCAGGTTGTAGAACTGGAAGCGGTGTCAAAGCATCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTc                        <  4:85623/149‑1 (MQ=255)
                                                                                                                     caGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGTGGTc                        >  1:349512/1‑148 (MQ=255)
                                                                                                                      aGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCa                       >  4:79333/1‑148 (MQ=255)
                                                                                                                        ggAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAg                    >  8:308224/1‑149 (MQ=255)
                                                                                                                        ggAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAg                    <  3:103513/149‑1 (MQ=255)
                                                                                                                        ggAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAg                    >  8:26269/1‑149 (MQ=255)
                                                                                                                        ggAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAg                    >  8:20280/1‑149 (MQ=255)
                                                                                                                             accacTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTc                        >  4:345053/1‑140 (MQ=255)
                                                                                                                             accacTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTc                        <  3:345053/140‑1 (MQ=255)
                                                                                                                             accacTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTc                        <  3:339438/140‑1 (MQ=255)
                                                                                                                             accacTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTc                        >  4:339438/1‑140 (MQ=255)
                                                                                                                                acTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCGACATCTGGAGGGATTCCCGAGCGGTCAAAGGggacgga            <  7:179944/149‑1 (MQ=255)
                                                                                                                                 cTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGc                                                   >  1:158614/1‑109 (MQ=255)
                                                                                                                                 cTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGc                                                   <  2:147841/109‑1 (MQ=255)
                                                                                                                                 cTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGc                                                   >  1:147841/1‑109 (MQ=255)
                                                                                                                                 cTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGc                                                   <  2:158614/109‑1 (MQ=255)
                                                                                                                                       tggtAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGa                                         >  1:150670/1‑113 (MQ=255)
                                                                                                                                       tggtAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGa                                         <  2:150670/113‑1 (MQ=255)
                                                                                                                                          tAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAGGGGACGGACTGTAAATcc  >  6:242475/1‑149 (MQ=255)
                                                                                                                                          tAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAGGGGACGGACTGTAAATcc  <  1:354196/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                             
CTGGACCAAACGGTGCTCTTGGCTCTTTCCAATGATTTCAAAGACTTAAAACATAAAATTATTTTCTGCCAGGGTATTGCAACTGACGAATAGCTTGATAGAATGGCGCCCGCTTCACAGGGAACACCACTCAGGTGGTAGAACTGGAAGCGGTGTCAAAGCAGCTAAGTTTCAGATTTGATTGAAAAAATTTGAAAAAACGCTTGACACTAGGACGGCAGACAAATAGAATGCCGGCCACATCTGGAGGGATTCCCGAGCGGTCAAAGGGGACGGACTGTAAATCC  >  NC_002947/532126‑532412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.