New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1200751	48 (0.750)	4 (0.070)	4/242	NT	7.9%	coding (407/456 nt)	gspG	protein secretion protein
	?	NC_002947	= 1200763	47 (0.770)					coding (419/456 nt)	gspG	protein secretion protein

CGCTGCCTCGGGCCTGGCGCAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCA  >  NC_002947/1200619‑1200909                                                                                                                                                 |                                                                                                                                                   cGCTGCCTCGGGCCTGGCGCAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAaggc                                                                                                                                                >  3:293114‑M2/1‑145 (MQ=255)            gCCTGGCGCAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGa                                                                                                                                     >  2:9904/1‑149 (MQ=255)                ggCGCAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTg                                                                                                                                 >  6:277737/1‑149 (MQ=255)                 gcgcAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTTCCGGGCGGCGAAGGCCAGGATGCCGACCTgg                                                                                                                                <  5:161104/149‑1 (MQ=255)                 gcgcAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTgg                                                                                                                                <  8:77648/149‑1 (MQ=255)                  cgcAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTggg                                                                                                                               <  2:286854/149‑1 (MQ=255)                        gATGGCGACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACt                                                                                                                          <  8:135916/148‑1 (MQ=255)                         aTGGCTACGTGCGTCGCGTGCCGTAAGTCACGTGGGGCTGCGCTTATCTGTACCGCATGCCGGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGTCGAAGGCCAGGATGCCGACCTGGGTAACTg                                                                                                                         <  3:316068/148‑1 (MQ=255)                         aTGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTgg                                                                                                                        <  5:122062/149‑1 (MQ=255)                            gCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGgcg                                                                                                                     >  6:94225/1‑149 (MQ=255)                             cTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGgcgc                                                                                                                    >  8:200258/1‑149 (MQ=255)                              tACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCt                                                                                                                   >  6:310650/1‑149 (MQ=255)                                   gCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAAc                                                                                                              >  7:101138/1‑149 (MQ=255)                                     gTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGgcgc                                                                                                                    >  6:377338/1‑141 (MQ=255)                                     gTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGgcgc                                                                                                                    <  5:377338/141‑1 (MQ=255)                                         ccTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTgc                                                                                                        <  1:9904/149‑1 (MQ=255)                                           tGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAgg                                                                                                                                            >  2:204693/1‑111 (MQ=255)                                             ccGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTgcgc                                                                                                      <  2:291903/147‑1 (MQ=255)                                             ccGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGcgcg                                                                                                     <  5:310650/148‑1 (MQ=255)                                                gAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGAGGCGAAGGCCAGGATGCCGACCTGGGTTACTGGGCGCGGTCCCAGGTGCGCGGt                                                                                                   >  8:5660/1‑147 (MQ=255)                                                   gACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCg                                                                                              <  1:52875/149‑1 (MQ=255)                                                    aCCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGt                                                                                             <  5:111205/149‑1 (MQ=255)                                                    aCCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGt                                                                                             <  3:339558/149‑1 (MQ=255)                                                         tGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCtt                                                                                        >  6:109729/1‑149 (MQ=255)                                                           gggCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGCTGCCGCCCGGGGGAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCtg                                                                                        >  4:271378/1‑146 (MQ=255)                                                           gggCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCtt                                                                                        >  3:117214/1‑147 (MQ=255)                                                             gCACCCGTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGc                                                                                    <  8:101138/149‑1 (MQ=255)                                                                 cccTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGa                                                                                >  5:88102/1‑149 (MQ=255)                                                                   cTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATc                                                                              >  3:225560/1‑149 (MQ=255)                                                                          gTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGt                                                                                                          <  1:163500/114‑1 (MQ=255)                                                                          gTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGt                                                                                                          >  2:163500/1‑114 (MQ=255)                                                                              cGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAg                                                                                                                                             >  1:68903/1‑75 (MQ=255)                                                                              cGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAg                                                                                                                                             <  2:68903/75‑1 (MQ=255)                                                                               gCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCtggtg                                                                  <  5:277737/149‑1 (MQ=255)                                                                                   gCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGgtgt                                                              >  4:338588/1‑149 (MQ=255)                                                                                     ccGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCtggtg                                                                  >  7:166049/1‑143 (MQ=255)                                                                                     ccGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTg                                                            >  3:313468/1‑149 (MQ=255)                                                                                     ccGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGATGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCtggtg                                                                  <  8:166049/143‑1 (MQ=255)                                                                                        gTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCt                                                         <  4:225560/149‑1 (MQ=255)                                                                                                      gTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCtgat                                           <  7:200258/149‑1 (MQ=255)                                                                                                          aTGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGAcc                                       <  6:88102/149‑1 (MQ=255)                                                                                                                    gCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCAGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCgg                             >  6:350969/1‑149 (MQ=255)                                                                                                                        ggCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTgg                          <  7:15206/148‑1 (MQ=255)                                                                                                                          cgcCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTACCTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGAGTCAGCCTGATCGAGCTGCTTGTGGTGTTTGCTATCGCCGGGCTGATGACCGGGCTGGCGGTggccg                       <  7:5660/149‑1 (MQ=255)                                                                                                                           gcCGATGGCCTGCCGGGCGGCGAaggccatcggcgcccagcgagtacacatcgacccggccatgttcaccgggcatgcggtactgataaggggtgccccacgggtcttccggca                                                         <  3:299699‑M2/114‑92 (MQ=255)                                                                                                                           gcCGATGGCCTGCCGGGCGGCGAaggccatcggcgcccagcgagtacacatcgacccggccatgttcaccgggcatgcggtactgataaggggtgccccacgggtcttccggca                                                         >  4:299699‑M2/1‑23 (MQ=255)                                                                                                                             cGATGGCCTGCCGGGCGGCGAaggccatcggcgcccagcgagtacacatcgacccggccatgttcaccgg                                                                                                   <  6:397707‑M2/70‑50 (MQ=255)                                                                                                                             cGATGGCCTGCCGGGCGGCGAaggccatcggcgcccagcgagtacacatcgacccggccatgttcaccgg                                                                                                   >  5:397707‑M2/1‑21 (MQ=255)                                                                                                                             cGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTggccggcc                    >  3:325293/1‑149 (MQ=255)                                                                                                                                tGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTg                 <  4:117214/149‑1 (MQ=255)                                                                                                                                tGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCAGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTg                 <  5:350969/149‑1 (MQ=255)                                                                                                                                 ggCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCt                                                                                         <  1:353564/76‑1 (MQ=255)                                                                                                                                 ggCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCt                                                                                         >  2:353564/1‑76 (MQ=255)                                                                                                                                     tGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTgg                                                           <  7:87942/102‑1 (MQ=255)                                                                                                                                     tGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTgg                                                           >  8:87942/1‑102 (MQ=255)                                                                                                                                              gcgAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTggccggc                     >  7:355937/1‑131 (MQ=255)                                                                                                                                              gcgAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTggccggc                     <  8:355937/131‑1 (MQ=255)                                                                                                                                               cgAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACggccaggcca  <  3:338588/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CGCTGCCTCGGGCCTGGCGCAGTGATGGCTACGTGCGTCGCCTGCCGGAAGACCCGTGGGGCACCCCTTATCAGTACCGCATGCCCGGTGAACATGGCCGGGTCGATGTGTACTCGCTGGGCGCCGATGGCCTGCCGGGCGGCGAAGGCCAGGATGCCGACCTGGGTAACTGGGCGCTGTAACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCA  >  NC_002947/1200619‑1200909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.