New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1838343	58 (0.910)	5 (0.080)	5/234	NT	9.3%	coding (228/414 nt)	PP_1643	membrane protein
	?	NC_002947	= 1838362	44 (0.750)					coding (209/414 nt)	PP_1643	membrane protein

TAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCATGCCAGGCTCAATGCCCGC  >  NC_002947/1838214‑1838508                                                                                                                                                     |                                                                                                                                                   tAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCa                                                                                                                                                    <  5:151051/149‑1 (MQ=255) tAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCa                                                                                                                                                    <  7:314566/149‑1 (MQ=255)   gCCCGTCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCGAGCACGCCGTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCa                                                                                                                                                    <  8:179377/147‑1 (MQ=255)   gCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAg                                                                                                                                                   <  7:179377‑M2/148‑2 (MQ=255)       ggCAATGAACAGCCGCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAgcatgc                                                                                                                                              >  4:200955‑M2/1‑143 (MQ=255)          aaTGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAgcatgcctg                                                                                                                                           >  7:322453‑M2/1‑140 (MQ=255)            tGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGgc                                                                                                                                         <  3:128642/149‑1 (MQ=255)                cAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGgcaaca                                                                                                                                     <  2:288169/149‑1 (MQ=255)                cAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGgcaa                                                                                                                                       >  4:62857/1‑147 (MQ=255)                  gCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAATGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGgcaacagc                                                                                                                                   <  8:150956/149‑1 (MQ=255)                   ccccAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGgcaacagc                                                                                                                                   >  2:101067/1‑148 (MQ=255)                     ccATGCTGACCACGAATTCAAGGCATCCGAATTCCCGCCGGGCCGGGGCGTACGGCGGCATCACGGCCTTTATGTAATATTATTTCCCCATGTATGCTGTTCATGGATGCGGCCGGGCGCTGCCTTTCAGCATGCCTGgcaacagcaac                                                                                                                                <  8:189112/149‑1 (MQ=255)                          cTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAAcagcaacagcaa                                                                                                                           <  3:277835/149‑1 (MQ=255)                             aCCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACagcaacagcaac                                                                                                                          <  1:101067/147‑1 (MQ=255)                               cAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCAGGCAACAGCAACAGCAACGGCa                                                                                                                      >  4:359332/1‑149 (MQ=255)                                 gCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCAc                                                                                                                     >  1:357057/1‑148 (MQ=255)                                    cTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGc                                                                                                                 <  5:100998/149‑1 (MQ=255)                                     ttCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCt                                                                                                                >  6:63645/1‑149 (MQ=255)                                       cAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTc                                                                                                               >  7:127833/1‑148 (MQ=255)                                          gccagccGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATc                                                                                                           <  8:161853/149‑1 (MQ=255)                                              gccGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCa                                                                                                       <  1:246470/149‑1 (MQ=255)                                                    tACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCa                                                                                                 >  6:79404/1‑149 (MQ=255)                                                         cccgcGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTc                                                                                             >  3:67954/1‑148 (MQ=255)                                                              gcCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCt                                                                                       <  1:404643/149‑1 (MQ=255)                                                                             gccAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGtt                                                                        >  7:199468/1‑149 (MQ=255)                                                                             gccAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGtt                                                                        <  2:357057/149‑1 (MQ=255)                                                                                aGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGc                                                                     <  8:199468/149‑1 (MQ=255)                                                                                   aCGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGc                                                                                                         >  1:184884/1‑110 (MQ=255)                                                                                   aCGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGc                                                                                                         <  2:184884/110‑1 (MQ=255)                                                                                    cGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAAc                                                                 >  6:283413/1‑149 (MQ=255)                                                                                       ccTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACca                                                               >  8:122339/1‑148 (MQ=255)                                                                                       ccTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACca                                                               >  8:41108/1‑148 (MQ=255)                                                                                             tgaAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGgttg                                                        <  3:359332/149‑1 (MQ=255)                                                                                               aaaTAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGgttgtt                                                      >  8:292255/1‑149 (MQ=255)                                                                                                  tAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcac                                                   <  7:292255/149‑1 (MQ=255)                                                                                                           accaccAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAgcatgcctggacctgcttcgtggtgaa                                                                                                                         >  3:37798‑M2/1‑43 (MQ=255)                                                                                                           accacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGTAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACcagcag                                          >  2:26812/1‑149 (MQ=255)                                                                                                           accacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCATTCAgcatgcctggacctgcttcgtggtgaa                                                                                                                         <  4:37798‑M2/70‑28 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcaccac                                                <  5:306578/141‑1 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcaccac                                                >  6:300851/1‑141 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcaccac                                                >  6:306578/1‑141 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcaccac                                                <  5:300851/141‑1 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACcagcag                                          <  8:378243/147‑1 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACcagcag                                          >  7:378243/1‑147 (MQ=255)                                                                                                             cacGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAACTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAggg                                        >  6:352058/1‑149 (MQ=255)                                                                                                                    cAGGTCCAGGCATCCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGTAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAg                                 <  1:26812/149‑1 (MQ=255)                                                                                                                     aGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAgg                                <  5:63645/149‑1 (MQ=255)                                                                                                                       gTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCTACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGaa                                                                  <  8:123359/113‑1 (MQ=255)                                                                                                                           aGGCATGCGCCCGGGCGCTGCCTTTCAgcatgcctggacctgcttcgtggtgaatatctatttcatcaagggcgtgctggcggcgttcgacccggcgcgggcggtattcggctggcttgaagtgctggtgagcctggggctgttcattg                          <  2:242622‑M2/149‑123 (MQ=255)                                                                                                                           aGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCgaag                          <  5:79404/149‑1 (MQ=255)                                                                                                                            ggCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcacca                                                 <  2:403595/125‑1 (MQ=255)                                                                                                                            ggCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTcacca                                                 >  1:403595/1‑125 (MQ=255)                                                                                                                             gCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCgaagaa                        <  5:283413/149‑1 (MQ=255)                                                                                                                                 gcgcCCGGGCGCTGCCTTTCAgcatgcctggacctgcttcgtggtgaatatctatttcatcaagggcgtgctggcggcgttcga                                                                                     >  5:188655‑M2/1‑21 (MQ=255)                                                                                                                                 gcgcCCGGGCGCTGCCTTTCAgcatgcctggacctgcttcgtggtgaatatctatttcatcaagggcgtgctggcggcgttcga                                                                                     <  6:188655‑M2/84‑64 (MQ=255)                                                                                                                                  cgcCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCAt                    <  3:62857/148‑1 (MQ=255)                                                                                                                                               ccTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCATGCCAGGCTCAATg       <  4:67954/148‑1 (MQ=255)                                                                                                                                                cTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCATGCCAGGCTCAATGcc     >  3:133391/1‑149 (MQ=255)                                                                                                                                                    cAGCATGCCTGGCAACAGCAACAGCAACGGCACCAACTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCATGCCAGGCTCAATGCCcgc  <  5:352058/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGCCCTTGATGAAATAGATATTCACCACGAAGCAGGTCCAGGCATGCGCCCGGGCGCTGCCTTTCAGCATGCCTGGCAACAGCAACAGCAACGGCACCAGCTCGATCGCCAGGATCACCTCGACCCTGGCCCCATGCAGGTTGGCGAACCACAGGTTGTTCACCACCAGCAGGGCGATCAGGCCGAAGAAGCATGCCAGGCTCAATGCCCGC  >  NC_002947/1838214‑1838508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.