New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3336525 =	46 (0.720)	3 (0.050)	3/242	NT	6.3%	coding (71/843 nt)	yghU	GSH‑dependent disulfide bond oxidoreductase
	?	NC_002947	3336564 =	45 (0.740)					coding (32/843 nt)	yghU	GSH‑dependent disulfide bond oxidoreductase

AATGGTGACCTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAGGGTGCAGGCG  >  NC_002947/3336416‑3336697                                                                                                                                                     |                                                                                                                                       ttgcgtcgaacccgtggcatagatgcaggtcaaggttttcacgtgaccgttttcgcgcctttgaaggagattcatgcatgagcaagcctgcctacgtgccacccaaagtCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGa                                                                                                                                        >  7:220753‑M1/110‑149 (MQ=255)    ggTGACCTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACtt                                                                                                                                     >  6:180286/1‑149 (MQ=255)        aCCTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTggg                                                                                                                                 >  4:285422/1‑149 (MQ=255)         ccTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGt                                                                                                                                <  4:363191/149‑1 (MQ=255)          cTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTg                                                                                                                               >  8:80972/1‑149 (MQ=255)             gACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTATGGGTGGCa                                                                                                                            >  7:362708/1‑149 (MQ=255)                gCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCa                                                                                                                            <  7:82187/146‑1 (MQ=255)                gCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCa                                                                                                                            >  8:82187/1‑146 (MQ=255)                          gTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTgg                                                                                                                              >  8:297577/1‑134 (MQ=255)                          gTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTgg                                                                                                                              <  7:297577/134‑1 (MQ=255)                             gCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGc                                                                                                             <  1:61444/148‑1 (MQ=255)                               cAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTca                                                                                                          <  3:47323/149‑1 (MQ=255)                                 gggAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGc                                                                                                             <  1:366284/144‑1 (MQ=255)                                 gggAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGc                                                                                                             >  2:366284/1‑144 (MQ=255)                                  ggAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACttt                                                                                                                                    <  4:65965/120‑1 (MQ=255)                                  ggAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACttt                                                                                                                                    >  3:65965/1‑120 (MQ=255)                                  ggAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTcatgc                                                                                                       <  3:386875/149‑1 (MQ=255)                                        cAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGaa                                                                                                  <  5:180286/148‑1 (MQ=255)                                        cAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAAt                                                                                                 >  2:223822/1‑149 (MQ=255)                                        cAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAAt                                                                                                 <  8:175062/149‑1 (MQ=255)                                         aGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAAtc                                                                                                >  5:53014/1‑149 (MQ=255)                                              cAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTcc                                                                                             <  4:9774/147‑1 (MQ=255)                                                        ttGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGgcgc                                                                                  >  7:743/1‑148 (MQ=255)                                                          gCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGa                                                                                >  2:313406/1‑148 (MQ=255)                                                                 ggCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTc                                                                        <  8:743/149‑1 (MQ=255)                                                                          ttGTCGTGAGTCTGGCGGTCTTCCTGGCGGTTTATGCTGGCGAACTGGCGGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGTGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑aaaa                                                              <  7:153554/149‑1 (MQ=255)                                                                          ttGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑aaaa                                                              >  8:216766/1‑149 (MQ=255)                                                                               gTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTg                                                         <  7:80972/149‑1 (MQ=255)                                                                                       ggCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTcc                                                                                             >  3:333243/1‑106 (MQ=255)                                                                                       ggCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTcc                                                                                             <  4:333243/106‑1 (MQ=255)                                                                                         ccGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATc                                                >  3:327640/1‑148 (MQ=255)                                                                                            gCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATg                                            >  8:280800/1‑149 (MQ=255)                                                                                               aCCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCa                                         >  5:113927/1‑149 (MQ=255)                                                                                                ccGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCAc                                        <  6:53014/149‑1 (MQ=255)                                                                                                      ggTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATg                                            <  5:113757/139‑1 (MQ=255)                                                                                                      ggTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATg                                            >  6:113757/1‑139 (MQ=255)                                                                                                        ttGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGa                                >  7:273178/1‑149 (MQ=255)                                                                                                             tctggcgcaacgacgcagcctccggcggccagttcgccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCaa                           >  7:220753‑M2/41‑149 (MQ=255)                                                                                                              CTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCaa                           >  1:223822‑M1/1‑148 (MQ=255)                                                                                                              CTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAAt                          >  5:139460‑M1/1‑149 (MQ=255)                                                                                                               tggcgcaacgacgcagcctccggcggccagttcgccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCg                                 <  6:61346‑M2/103‑1 (MQ=255)                                                                                                               tggcgcaacgacgcagcctccggcggccagttcgccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCg                                 >  5:61346‑M2/39‑141 (MQ=255)                                                                                                                      cTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAAt                  <  7:280800/149‑1 (MQ=255)                                                                                                                        ggCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATg                 >  7:237971/1‑148 (MQ=255)                                                                                                                         gccgccGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGca               <  6:113927/149‑1 (MQ=255)                                                                                                                          ccgccgGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCAc                                        <  2:187206/123‑1 (MQ=255)                                                                                                                          ccgccgGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCAc                                        >  1:187206/1‑123 (MQ=255)                                                                                                                            gccgGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTGTAAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGcaca             <  1:313406/149‑1 (MQ=255)                                                                                                                             ccgGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAgg           <  4:327640/149‑1 (MQ=255)                                                                                                                               ggAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCtt                                                          >  6:173053/1‑100 (MQ=255)                                                                                                                               ggAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCtt                                                          <  5:173053/100‑1 (MQ=255)                                                                                                                                   gCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGTCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCTCGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAGGGTGCAg     <  1:327267/149‑1 (MQ=255)                                                                                                                                   gCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAGGGTGCAg     <  1:234920/149‑1 (MQ=255)                                                                                                                                      gCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AACACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAGGGTGCAGgcg  >  6:136137/1‑149 (MQ=255)                                                                                                                                                gccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGgc                                                                                    >  6:152212‑M2/6‑58 (MQ=255)                                                                                                                                                gccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGgc                                                                                    <  5:152212‑M2/53‑1 (MQ=255)                                                                                                                                                gccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGAGTTCGAc                               <  4:220283‑M2/105‑1 (MQ=255)                                                                                                                                                gccagACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGAGTTCGAc                               >  3:220283‑M2/6‑110 (MQ=255)                                                                                                                                                     |                                                                                                                                       AATGGTGACCTTGACGCCATTGGGCGTGGCCAGGGAATACAGCTGCAGCGGGTGCTTGCCCAGCGGCAGGTCCTTGTCGTGAGTCGGGCCGGCTACCGGGCGGTTGATGCTGGCGAACTGGCCGCCGGAGGCTGCGTCGTTGCGCCAGACTTTGGGTGGCACGTAGGCAGGCTTGCTCATGCATGAATCTCCTTCAAAGGCGCGAAAACGGTCACGTG‑AAAACCTTGACCTGCATCTATGCCACGGGTTCGACGCAATGCGCAAATGCACAGGGTGCAGGCG  >  NC_002947/3336416‑3336697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.