New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	744921 =	NA (NA)	43 (1.190)	38/288	0.1	93.5%	intergenic (‑586/+45)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	748230 =	3 (0.080)					coding (283/819 nt)	PP_5449	hypothetical protein

CCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/745056‑744921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGAATGCTGAG  >  NC_002947/748230‑748373                                                                                                                                                                                                                                                                                          CCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGAC                                                                                                                                      <  7:106942/148‑1     GTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCC                                                                                                                                  <  1:128315/148‑1        CTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCA                                                                                                                               >  3:88839/1‑148            AGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAAC                                                                                                                             <  6:146156/146‑1                ACTGCCGCACGCCTCGTCGGTAGCAGACTACTAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAG                                                                                                                       <  1:209994/148‑1                 CTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGG                                                                                                                      <  8:35909/148‑1                            CTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTT                                                                                                             >  3:22861/1‑146                                TCGGTAGCAGACTACGAAGCGCTGCTTCCATGGAACTGATCGCCAGAGATGCCACGGTAACTTTCGCTTCCACCATGACGTACGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCCGTTTGAccg                                                                                                       >  4:58136/1‑145                                     AGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGAT                                                                                                  <  4:88839/148‑1                                            TACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGG                                                                                                    >  7:23868/1‑139                                             ACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGA                                                                                                   <  8:23868/139‑1                                               GAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCT                                                                                        >  3:34892/1‑148                                               GAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGGTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGTGCGGATGGTCTTGT                                                                                          <  3:37215/146‑1                                               GAAGCGCTGCTGCCAGGGCACTGGTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGgc                                                                                         <  6:34980/147‑3                                                    GCTGCTGCCATGGAACTGTTCGCCAGAGATGCCCCGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGGAAGGTGCTCGGTTTGCGGGCGGATGGTCTTGTCTGGAA                                                                                    >  7:91063/1‑147                                                             ATGGAACTGTTCGACAGAGATGCCACGGTAACTTTGGCTTACACATTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCC                                                                           >  6:181485/1‑147                                                               GGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCG                                                                          >  8:101093/1‑146                                                                 AACTGTTCGCGAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAA                                                                       <  3:58136/147‑1                                                                 AACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAG                                                                      <  5:19506/148‑1                                                                 AACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAG                                                                      <  4:34892/148‑1                                                                            AGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGAC                                                           >  7:60060/1‑148                                                                                  GCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGA                                                      >  5:149295/1‑147                                                                                     ACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAA                                                                        >  4:128877/1‑126                                                                                      CGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAA                                                                       <  3:128877/126‑1                                                                                       GGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCT                                                >  5:159259/1‑148                                                                                             TTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGTCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAA                                          >  8:57186/1‑148                                                                                             TTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAA                                          <  8:60060/148‑1                                                                                             TTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAA                                          <  2:104114/148‑1                                                                                                GGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAG                                         <  8:158388/146‑1                                                                                                 GCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGA                                       <  3:15852/147‑1                                                                                                   TTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAA                                      >  8:83249/1‑146                                                                                                       ACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCC                                >  4:106159/1‑148                                                                                                        CCTTGTGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCC                               <  6:149295/148‑1                                                                                                             TGGTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAA                           <  5:181485/147‑1                                                                                                               GTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGATGTAGATCAGCTACTCAAGGAACAAGCCCGGAAA                          >  6:58165/1‑146                                                                                                               GTAGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAG                        >  3:19130/1‑148                                                                                                                 AGGTGGGGTTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAG                      <  1:77511/148‑1                                                                                                                         TTCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAG                                         >  2:56495/1‑121                                                                                                                          TCATGGATCGGTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGG                                        <  1:56495/121‑1                                                                                                                             TGGATCGGTTACAGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGA          <  1:41355/148‑1                                                                                                                              GGATCGGTTCCCGAAGTTTGGCCTGCCTCAACTGTACGGTGCGCGGTCTGAGGGCGGATGGGCTGGTCTGGAATTATGATCCGAAAGGGCCGTAGGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGAA         <  8:60106/148‑1                                                                                                                                    GTTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGAATGCTGA   <  7:17176/148‑1                                                                                                                                     gTACCGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGAGGGTCTGGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGAATGCTGAG  <  8:119882/147‑1                                                                                                                                                                                                                                                                                          CCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/745056‑744921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAGTTTGGACTGCCTCAACTGTAAGGTGCTCGGTTTGAGGGCGGATGGTCTTGTCTGGAATTATGATCCGAAAGGGCCGTATGACGTAGATCAGCTACTCAAGGAACAAGCCCGGAAAAGAGAAGAGGCCTTGAATGCTGAG  >  NC_002947/748230‑748373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.