New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	744921 =	NA (NA)	43 (1.190)	38/288	0.1	93.5%	intergenic (‑586/+45)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	748230 =	3 (0.080)					coding (283/819 nt)	PP_5449	hypothetical protein

CAAGTATTTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAG  >  NC_002947/744776‑745061                                                                                                                                                  |                                                                                                                                             cAAGTATTTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTa                                                                                                                                            >  4:32765/1‑148 (MQ=255)      aTTTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGa                                                                                                                                       <  3:50438/148‑1 (MQ=255)       tttATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGAt                                                                                                                                      >  2:174753/1‑148 (MQ=255)        ttATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGAt                                                                                                                                      >  1:78645/1‑147 (MQ=255)        ttATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATc                                                                                                                                     <  6:47249/148‑1 (MQ=255)          aTGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGAAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATcc                                                                                                                                    <  5:138455/147‑1 (MQ=255)            gATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGACGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCAt                                                                                                                                  <  5:111267/147‑1 (MQ=255)            gATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCAt                                                                                                                                  >  7:5552/1‑147 (MQ=255)                ttgaattgaCATTGGCACTTAGATTTTACTTTCTGGAAGCAAGGCAGGCAATGCTGTTTTTTGAGATGAACTGGCTCCAATTCGTTATGTCGAATTTTAAGGAAGCTGTCTAAGGTATCATGTGTTAGTAGTATCCGATCTATTaaa                                                                                                                              <  4:181497/147‑2 (MQ=255)                     ttgaCAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCAc                                                                                                                         >  8:144112/1‑147 (MQ=255)                        aCAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTa                                                                                                                      >  7:152047/1‑147 (MQ=255)                              ccACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTa                                                                                                                      >  2:109071/1‑141 (MQ=255)                               cACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTAc                                                                                                                     <  1:109071/141‑1 (MQ=255)                                aCTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGt                                                                                                             <  7:13841/148‑1 (MQ=255)                                      aaTTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGc                                                                                                       <  4:140921/148‑1 (MQ=255)                                             aTTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGtt                                                                                                >  5:125928/1‑148 (MQ=255)                                                    aaGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGt                                                                                           <  6:119597/146‑1 (MQ=255)                                                         aggcaggcAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAtct                                                                                    <  3:38475/148‑1 (MQ=255)                                                                  aTGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAAc                                                                           <  8:152047/148‑1 (MQ=255)                                                                         ttgatCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCa                                                                    <  5:59512/148‑1 (MQ=255)                                                                              cAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGgca                                                               <  8:34670/148‑1 (MQ=255)                                                                                                 tCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGc                                            <  2:78645/148‑1 (MQ=255)                                                                                                    atatGGCGAAAGTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTAc                                         <  1:130561/148‑1 (MQ=255)                                                                                                          cGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGa                                   <  7:144112/148‑1 (MQ=255)                                                                                                          cGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGa                                   <  8:34227/148‑1 (MQ=255)                                                                                                             aaTTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGc                                <  8:122460/148‑1 (MQ=255)                                                                                                                     gAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCa                        >  2:210505/1‑148 (MQ=255)                                                                                                                     gAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCa                        >  2:185753/1‑148 (MQ=255)                                                                                                                        ggtGTCGCATCTAAGATGGCTTAGAAGTATGGTATTCATGAACGCCACCTTCCTCTTGGTGGAAGTGAAAGTTAGGGTGGGATGTCTTGCTAACTGTTCCATGGCATCAGCGCTTCGTAGTCTGCTACGGATTAGGCGTTCGGCAGt                      <  6:93460/145‑1 (MQ=9)                                                                                                                         cTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCg                    >  5:107773/1‑148 (MQ=255)                                                                                                                            tCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCt                  >  2:143644/1‑147 (MQ=255)                                                                                                                                   tAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCAATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTACAGGACg          >  1:44884/1‑148 (MQ=255)                                                                                                                                      cATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTgg       <  1:206154/148‑1 (MQ=39)                                                                                                                                            ttAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAg  >  4:138861/1‑147 (MQ=34)                                                                                                                                                  |                                                                                                                                             CAAGTATTTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAG  >  NC_002947/744776‑745061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.