New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 149945836 (0.550)13 (0.200) 9/270 6.5 30.1% intergenic (+35/‑129) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
?NC_002947 = 1499495 25 (0.390)intergenic (+72/‑92) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.

AGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑‑TCGGGCACG‑CCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATC  >  NC_002947/1499350‑1499608
                                                                                                                                                  |                                                                                                                      
aGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGt‑tc                                                                                                                    >  6:367781/1‑148 (MQ=255)
 gTTCGACAACGCTGAAGCCAGTGATGGGGCCATTCAGAGCCTGAACGAAGCCTTGGCACAACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCCGCGTTGCCGGTGt‑tgc                                                                                                                   >  1:11437/1‑147 (MQ=37)
    cGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGt‑tcgcgg                                                                                                                >  8:359346/1‑144 (MQ=255)
                 gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCATCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTcc                                                                                                  >  1:74017/1‑149 (MQ=25)
                 gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACCGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCCCAA‑CAGTCGCCGCGGTGCAAGGCCCCCGCGTTGCCGGTGT‑TC‑GCGGGCAcc‑cccccgcc                                                                                                 >  5:289016/1‑143 (MQ=255)
                    cGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TA‑GCGGGCACGCCCGCTCCca                                                                                                >  2:100375/1‑148 (MQ=25)
                     gTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCcaca                                                                                              <  5:1435/149‑1 (MQ=21)
                         tGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGAc                                                                                           <  1:308303/149‑1 (MQ=21)
                               aaTTCATAGCCTTAACCAAGCCTTGGAACCACACCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCTAAA‑AAGGCGCCGCGGTGCAGGGCACCGGCTTGGCCGGTTTGC‑‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGc                                                                                   <  2:11437/148‑1 (MQ=18)
                                        ccTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCg                                                                          >  8:89542/1‑149 (MQ=21)
                                           gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCAAAGCCGgtgc                                                                                                                       <  1:50548/104‑2 (MQ=25)
                                           gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCAAAGCCGgtgc                                                                                                                       >  2:50548/1‑103 (MQ=25)
                                            aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGc                                                                       <  7:89542/148‑1 (MQ=21)
                                               gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCCCCCAA‑CACGCGCCCCCGTGCAATGCACCCGCGTTGGCGGTGT‑TA‑GCGGGCCCGCCCCCACCCCCAGACAGATTTCCCATTAACCGGGcta                                                                     >  8:15027/1‑146 (MQ=255)
                                                aaGCCTTGCCACCACAGCTGGACTTCGGCTCCCAAACGGTGGGAGCGGGCGTCCCCGCGAAA‑CAGGCGCCGGGGTGCATGGCACGGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATc                                                                  <  7:324099/149‑1 (MQ=21)
                                                     ttGCCACCACCGCCGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGAc                                                                                           <  3:69026/120‑1 (MQ=14)
                                                        gCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGTCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACa                                                            <  1:100375/148‑1 (MQ=25)
                                                          accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCAGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGa                                                        >  7:204099/1‑149 (MQ=21)
                                                                         aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                           <  7:359346/147‑1 (MQ=21)
                                                                           gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGTCTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                           <  1:91240/145‑1 (MQ=21)
                                                                           gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                           >  2:91240/1‑145 (MQ=21)
                                                                            cTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAA‑CCCGCGCCGCGGTGCCTGGCACCGGGGTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc                                      <  5:367781/149‑1 (MQ=21)
                                                                                  aaCGGTGGGAGCGGGCGGGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGc                                                    <  3:353454/129‑1 (MQ=18)
                                                                                   aCGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACGGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACa                                                            <  5:71002/120‑1 (MQ=17)
                                                                                      gTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TA‑ACGGGCACGCCCGCGCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc                             >  7:347154/1‑148 (MQ=25)
                                                                                                     cccGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGAACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt              <  2:312896/148‑1 (MQ=37)
                                                                                                      ccGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTAt                                                                   >  6:214450/1‑94 (MQ=17)
                                                                                                      ccGCGAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTAt                                                                   <  5:214450/94‑1 (MQ=17)
                                                                                                       cgcgAAA‑CAGGCGCCGCGGTGCCTGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttt                                             >  7:246076/1‑115 (MQ=21)
                                                                                                       cgcgAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttt                                             <  8:246076/115‑1 (MQ=21)
                                                                                                        gcgAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                        <  4:66978/119‑1 (MQ=21)
                                                                                                        gcgAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                        >  3:66978/1‑119 (MQ=21)
                                                                                                         cgAAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGaa         <  7:15027/149‑1 (MQ=37)
                                                                                                            aa‑CAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGc      >  6:303859/1‑149 (MQ=37)
                                                                                                                       gcgGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc  >  7:150151/1‑143 (MQ=37)
                                                                                                                       gcgGTGCATGGCACCGGCTTTGCCGGTGT‑TC‑GCGGGCACGCCCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc  <  8:150151/143‑1 (MQ=37)
                                                                                                                                                  |                                                                                                                      
AGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAA‑CAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑‑TCGGGCACG‑CCGCTCCCACAGACTGA‑TTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATC  >  NC_002947/1499350‑1499608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.