New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 209901	NA (NA)	5 (0.070)	5/254	NT	72.5%	coding (15407/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 209956	2 (0.030)					coding (15462/26049 nt)	PP_0168	putative surface adhesion protein

CACCGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCggtgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/209755‑209901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  <  NC_002947/209956‑209802                                                                                                                                                                                                                                                                                                                CACCGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGG                                                                                                                                                           >  8:340711/1‑149  ACCGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGT                                                                                                                                                          <  8:321021/149‑1   CCGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTG                                                                                                                                                         <  5:226155/149‑1    CGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGA                                                                                                                                                        >  8:47629/1‑149    CGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGA                                                                                                                                                        <  4:176262/149‑1     GTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGAC                                                                                                                                                       <  8:83580/149‑1      TGGGCACTGCCACCGTGACTGCACCGGACAACGTCTACGTCGGCGCTAACGACACTGTCGTGATGTCGATCGCAAACGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACC                                                                                                                                                      >  7:63907/1‑149                         TGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCTTGACCAAGTCGCCTTCGT                                                                                                                                   >  2:7770/1‑149                                                       CGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCG                                                                                                     <  1:7770/149‑1                                                          CCCTGTCGTGATGTCGATCGCTACCGTTGAGGGCGCGTATGTCGGCAACTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACG                                                                                                  <  7:162587/149‑1                                                             TGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGT                                                                                                                                                          >  8:174723/1‑90                                                             TGTCGTGATGTCGATCGCAACCGTTGAGGGCGAGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGT                                                                                                                                                          <  7:174723/90‑1                                                                                                  GTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTG                                                                                                <  4:71546/111‑1                                                                                                  GTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTG                                                                                                >  3:71546/1‑111                                                                                                                                                    GGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTT                                 >  7:145117/1‑124                                                                                                                                                    GGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTT                                 <  8:145117/124‑1                                                                                                                                                     GTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGT        >  5:55383/1‑148                                                                                                                                                     GTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGT        <  8:7435/148‑1                                                                                                                                                      TGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTA      <  1:171606/149‑1                                                                                                                                                       GACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAG     >  4:284054/1‑149                                                                                                                                                       GACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTT                                 >  7:60933/1‑121                                                                                                                                                       GACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTT                                 <  8:60933/121‑1                                                                                                                                                        ACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGC    <  2:231704/149‑1                                                                                                                                                          CTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  <  3:93652/149‑1                                                                                                                                                          CTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  >  3:427418/1‑149                                                                                                                                                          CTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  >  8:386241/1‑149                                                                                                                                                          CTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  >  7:360582/1‑149                                                                                                                                                          CTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  >  1:409827/1‑149                                                                                                                                                                                                                                                                                                                CACCGTGGGCACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGCGCTAACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCggtgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/209755‑209901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCTTGACCAAGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTCACCGACGTGCTGACCGGCGTCTTGTCCAGCGTAAGCTGTTCGAACTTGCCGACATCCGCGCCCTCAACGGTTGCGATCGACATCACGACAGGGTCGTTAGCGC  <  NC_002947/209956‑209802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.