New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 209901	NA (NA)	5 (0.070)	5/254	NT	72.5%	coding (15407/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 209956	2 (0.030)					coding (15462/26049 nt)	PP_0168	putative surface adhesion protein

AACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTAC  >  NC_002947/209833‑210103                                                                                                                            |                                                                                                                                                    aaCCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACC                                                                                                                                                     >  7:145117‑M2/1‑124 (MQ=255) aaCCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACC                                                                                                                                                     <  8:145117‑M2/124‑1 (MQ=255)                                                                cACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgac                                                                                                   >  3:71546‑M2/1‑61 (MQ=255)                                                                cACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgac                                                                                                   <  4:71546‑M2/111‑51 (MQ=255)                                                                  cGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaagttgccgacatacgcgccctcaacggtagcgatcgacatcacgacaggg                                                           <  7:162587‑M2/149‑91 (MQ=255)                                                                     cGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcg                                                        <  1:7770‑M2/149‑94 (MQ=255)                                                                                                   aCGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagca                          >  2:7770‑M2/1‑26 (MQ=255)                                                                                                              ttGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGTCTGGCGAAAc               <  6:39128/149‑1 (MQ=11)                                                                                                              ttGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAAc               <  8:366149/149‑1 (MQ=11)                                                                                                                      ggTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacgtttgcgatcgacatcacgacagtgtcgttagcgccgacgtagacgttgtccggtgcagtcacggtggcagtgccca       >  7:63907‑M2/1‑7 (MQ=255)                                                                                                                       gTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccac      <  8:83580‑M2/149‑144 (MQ=255)                                                                                                                        tCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacg     >  8:47629‑M2/1‑5 (MQ=255)                                                                                                                        tCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacg     <  4:176262‑M2/149‑145 (MQ=255)                                                                                                                         cACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacgg    <  5:226155‑M2/149‑146 (MQ=255)                                                                                                                          aCCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatcctcgccctcaacggttgcgatcgacatcacgaca                                                              <  7:174723‑M2/90‑88 (MQ=255)                                                                                                                          aCCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacggt   <  8:321021‑M2/149‑147 (MQ=255)                                                                                                                          aCCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgaca                                                              >  8:174723‑M2/1‑3 (MQ=255)                                                                                                                           ccgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacggtg  >  8:340711‑M2/1‑2 (MQ=255)                                                                                                                            |                                                                                                                                                    AACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTAC  >  NC_002947/209833‑210103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.