New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2098975	59 (0.820)	7 (0.100)	7/252	NT	11.1%	coding (915/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2099067	57 (0.850)					coding (823/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator

GCTCTACCAGCACCTTGCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2098821‑2098975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcgcACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGCCTTCCTGGCCAACATGAGCCACGAAATCCGCACCCCGCTCAACGGCA  <  NC_002947/2099067‑2098920                                                                                                                                                                                                                                                                                                                 GCTCTACCAGCACCTTGCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCG                                                                                                                                                            <  4:193624/149‑1  CTCTACCAGCACCTTGCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGG                                                                                                                                                           >  7:393700/1‑149     TACCAGCACCTTGCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGC                                                                                                                                                        >  1:428029/1‑149                 GCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGC                                                                                                                                                        <  6:116473/137‑1                 GCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGC                                                                                                                                                        >  5:116473/1‑137                                     CCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGC                                                                                                                                                        >  2:248996/1‑117                                     CCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGC                                                                                                                                                        <  1:248996/117‑1                                        GTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCT                                                                                                                      >  4:150510/1‑148                                                                           AGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAG                                                                                  >  4:17402/1‑149                                                                                                       CGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGC                                                          >  3:304967/1‑145                                                                                                       CGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGC                                                          <  4:304967/145‑1                                                                                                           GAGCGGTGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCC                                                   <  2:61191/148‑1                                                                                                            AGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGC                                                 <  3:17402/149‑1                                                                                                            AGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCG                                                  <  3:150510/148‑1                                                                                                                                                      GCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGCCTTCCTGGCCAACATGAGCCACGAAATCCGCACCCCGCTCAA       >  5:26727/1‑149                                                                                                                                                      GCGCGCACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGCCTTCCTGGCCAACATGAGCCACGAAATCCGCACCCCGCTCAA       >  8:319916/1‑149                                                                                                                                                           CACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGCCTTCCTGGCCAACATGAGCCACGAAATCCGCACCCCGCTCAACGGCA  >  8:266139/1‑149                                                                                                                                                                                                                                                                                                                 GCTCTACCAGCACCTTGCCCGAGTCATGGGCGATAGCCAGTTGCTGGCGTTGCTCGCTGGGCAGCGGGTTGTCCAGCGCCAGGGCGATCATGCCGAGCATGCCGTTGAGCGGGGTGCGGATTTCGTGGCTCATGTTGGCCAGGAAGGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2098821‑2098975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcgcACCAACGAGCTCAAGGCCAGCAACAGCAGCCTGAGCCTGTCCAACCAGGAGCTGGAACAAGCCCGCAGCCGAGCGCTGGACATGGCCCAGGCGCGCGCCGCCTTCCTGGCCAACATGAGCCACGAAATCCGCACCCCGCTCAACGGCA  <  NC_002947/2099067‑2098920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.