New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3041397 =	39 (0.540)	4 (0.060)	4/256	NT	10.6%	coding (595/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	3041431 =	30 (0.440)					coding (561/819 nt)	PP_2653	Cro/CI family transcriptional regulator

AATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3041433‑3041397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  >  NC_002947/3041431‑3041578                                                                                                                                                                                           AATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTT                                       >  3:229057/1‑148   TCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCA                                           >  1:79291/1‑142   TCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCA                                           <  2:79291/142‑1                        GCGCGACTTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCT               <  4:229057/149‑1                                   CGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCA    <  5:416168/149‑1                                     GATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  <  1:64451/149‑1                                     GATTGCCTGCGGCCTCCCTGGAGGCACGTGGCCTGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  <  5:245870/149‑1                                                                                                                                                                                           AATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3041433‑3041397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  >  NC_002947/3041431‑3041578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.