New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3041397 =	39 (0.540)	4 (0.060)	4/256	NT	10.6%	coding (595/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	3041431 =	30 (0.440)					coding (561/819 nt)	PP_2653	Cro/CI family transcriptional regulator

GCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  >  NC_002947/3041286‑3041578                                                                                                                                                  |                                                                                                                                                    aacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGAtt                                                                                                                                                   >  3:229057‑M1/112‑148 (MQ=255)     tgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGa                                                                                                                                                     >  1:79291‑M1/108‑142 (MQ=255)     tgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGa                                                                                                                                                     <  2:79291‑M1/35‑1 (MQ=255)      ccAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGGGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTg                                                                                                                                              <  8:320537/148‑1 (MQ=255)        aaaGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCgg                                                                                                                                           <  3:90616/149‑1 (MQ=255)           ggtggtGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCt                                                                                                                                        <  8:80638/149‑1 (MQ=255)                 gAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg                                                                                                                                   >  6:73655/1‑148 (MQ=255)                  aaCGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGCCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg                                                                                                                                   >  5:44734/1‑147 (MQ=255)                    cGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAgg                                                                                                                               <  4:380501/149‑1 (MQ=255)                     gtggagtggaACCGCAGCTCACCATACGTGGTGTTGACGTGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTACCTGGAGGc                                                                                                                              <  2:19922/149‑1 (MQ=255)                     gTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTTTCGTCATCTGGCACGGGCTTGCGGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTTCCTGGAGGc                                                                                                                              <  2:12811/149‑1 (MQ=255)                          cAGGAACCGCAGCTCACCATTCGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                                                                         >  6:245870/1‑149 (MQ=255)                               aCCGCAGCTCACCATACGGGGTGTTCACGCGGTTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAg                                                                                                                    <  6:307649/149‑1 (MQ=255)                                      cTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGgc                                                                                                                  >  8:189571/1‑144 (MQ=255)                                      cTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGgc                                                                                                                  <  7:189571/144‑1 (MQ=255)                                                 gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                                                                         <  1:220556/126‑1 (MQ=255)                                                 gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                                                                         >  2:220556/1‑126 (MQ=255)                                                 gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                                                                  <  5:73655/149‑1 (MQ=255)                                                         aCGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGtt                                                                                          >  2:64451/1‑149 (MQ=255)                                                           gcgGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTgg                                                                                        >  8:112857/1‑149 (MQ=255)                                                                          agGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCa                                                                         <  4:49895/149‑1 (MQ=255)                                                                           ggggTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAg                                                                        <  4:410451/149‑1 (MQ=255)                                                                                     tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCgggg                                                              >  6:416168/1‑149 (MQ=255)                                                                                     tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCggg                                                               <  1:329564/148‑1 (MQ=255)                                                                                               gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCAcc                                                                           <  6:258550/126‑1 (MQ=255)                                                                                               gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAgtg                                                    >  8:136951/1‑149 (MQ=255)                                                                                               gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAgtg                                                    >  6:277901/1‑149 (MQ=255)                                                                                                    gacTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTg                                                >  1:170476/3‑148 (MQ=255)                                                                                                     gCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTgca                                              <  7:136951/149‑1 (MQ=255)                                                                                                      cTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                                                                  <  4:141729/96‑1 (MQ=255)                                                                                                      cTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                                                                  >  3:141729/1‑96 (MQ=255)                                                                                                             aatccggcactggcagcgcgcttgcgcgacttgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGtt                                       >  3:229057‑M2/38‑148 (MQ=255)                                                                                                               tccggcactggcagcgcgcttgcgcgacttgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTgcagca                                           <  2:79291‑M2/107‑1 (MQ=255)                                                                                                               tccggcactggcagcgcgcttgcgcgacttgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTgcagca                                           >  1:79291‑M2/36‑142 (MQ=255)                                                                                                                          gcgcAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGCTCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCg                         >  8:346572/1‑149 (MQ=255)                                                                                                                                   cgcTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTgcgc                <  7:112857/149‑1 (MQ=255)                                                                                                                                    gcgcgacttgccggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCt               <  4:229057‑M2/135‑1 (MQ=255)                                                                                                                                         cAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGacac          >  2:421173/1‑149 (MQ=255)                                                                                                                                         cAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGacac          <  6:44734/149‑1 (MQ=255)                                                                                                                                               cggATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCa    <  5:416168‑M2/146‑1 (MQ=255)                                                                                                                                                 gATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATc  <  1:64451‑M2/148‑1 (MQ=255)                                                                                                                                                 gATTGCCTGCGGCCTCCCTGGAGGCACGTGGCCTGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATc  <  5:245870‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACACCGGCCATC  >  NC_002947/3041286‑3041578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.