New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3041397 =	39 (0.540)	4 (0.060)	4/256	NT	10.6%	coding (595/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	3041431 =	30 (0.440)					coding (561/819 nt)	PP_2653	Cro/CI family transcriptional regulator

TGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCA  >  NC_002947/3041249‑3041534                                                                                                                                                     |                                                                                                                                          gatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatc                                                                                                                                           <  1:64451‑M1/1‑1 (MQ=255) gatggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgccaggccacgtgcctccagggaggccgcaggcaatc                                                                                                                                           <  5:245870‑M1/1‑1 (MQ=255)   ttCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCg                                                                                                                                         <  4:158235/149‑1 (MQ=255)   tggccggtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCg                                                                                                                                         <  5:416168‑M1/3‑1 (MQ=255)          cgcAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGt                                                                                                                                   <  5:163754/148‑1 (MQ=255)          cgcAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGACTTGCCGGCCCCGGCAAgc                                                                                                                                   <  3:170018/148‑2 (MQ=255)           gcAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGTAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAgc                                                                                                                                   <  8:151744/147‑2 (MQ=255)           gcAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAgc                                                                                                                                   >  7:151744/1‑146 (MQ=255)             aGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTcgcg                                                                                                                               >  3:380501/1‑149 (MQ=255)              agcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCgcgc                                                                                                                              <  4:229057‑M1/14‑1 (MQ=255)                  cTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAgc                                                                                                                          >  4:77498/1‑149 (MQ=255)                         gTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGc                                                                                                                   >  3:410451/1‑149 (MQ=255)                          tGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGc                                                                                                                   >  5:307649/1‑148 (MQ=255)                              aTCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTg                                                                                                              <  3:77498/149‑1 (MQ=255)                                 cTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCg                                                                                                           <  7:371675/149‑1 (MQ=255)                                    cGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCgg                                                                                                          <  1:265691/147‑1 (MQ=255)                                      aacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGAtt                                                                                                       >  3:229057‑M1/112‑148 (MQ=255)                                          tgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGa                                                                                                         >  1:79291‑M1/108‑142 (MQ=255)                                          tgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGa                                                                                                         <  2:79291‑M1/35‑1 (MQ=255)                                           ccAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGGGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTg                                                                                                  <  8:320537/148‑1 (MQ=255)                                             aaaGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCgg                                                                                               <  3:90616/149‑1 (MQ=255)                                                ggtggtGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCt                                                                                            <  8:80638/149‑1 (MQ=255)                                                      gAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg                                                                                       >  6:73655/1‑148 (MQ=255)                                                       aaCGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGCCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg                                                                                       >  5:44734/1‑147 (MQ=255)                                                         cGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAgg                                                                                   <  4:380501/149‑1 (MQ=255)                                                          gtggagtggaACCGCAGCTCACCATACGTGGTGTTGACGTGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTACCTGGAGGc                                                                                  <  2:19922/149‑1 (MQ=255)                                                          gTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTTTCGTCATCTGGCACGGGCTTGCGGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTTCCTGGAGGc                                                                                  <  2:12811/149‑1 (MQ=255)                                                               cAGGAACCGCAGCTCACCATTCGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                             >  6:245870/1‑149 (MQ=255)                                                                    aCCGCAGCTCACCATACGGGGTGTTCACGCGGTTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAg                                                                        <  6:307649/149‑1 (MQ=255)                                                                           cTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGgc                                                                      <  7:189571/144‑1 (MQ=255)                                                                           cTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGgc                                                                      >  8:189571/1‑144 (MQ=255)                                                                                      gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                             <  1:220556/126‑1 (MQ=255)                                                                                      gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGtt                                                                             >  2:220556/1‑126 (MQ=255)                                                                                      gggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                      <  5:73655/149‑1 (MQ=255)                                                                                              aCGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGtt                                              >  2:64451/1‑149 (MQ=255)                                                                                                gcgGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTgg                                            >  8:112857/1‑149 (MQ=255)                                                                                                               agGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCa                             <  4:49895/149‑1 (MQ=255)                                                                                                                ggggTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAg                            <  4:410451/149‑1 (MQ=255)                                                                                                                          tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCgggg                  >  6:416168/1‑149 (MQ=255)                                                                                                                          tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCggg                   <  1:329564/148‑1 (MQ=255)                                                                                                                                    gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCAcc                               <  6:258550/126‑1 (MQ=255)                                                                                                                                    gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAgtg        >  6:277901/1‑149 (MQ=255)                                                                                                                                    gCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAgtg        >  8:136951/1‑149 (MQ=255)                                                                                                                                         gacTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTg    >  1:170476/3‑148 (MQ=255)                                                                                                                                          gCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTgca  <  7:136951/149‑1 (MQ=255)                                                                                                                                           cTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                      <  4:141729/96‑1 (MQ=255)                                                                                                                                           cTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTcc                                                      >  3:141729/1‑96 (MQ=255)                                                                                                                                                     |                                                                                                                                          TGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCA  >  NC_002947/3041249‑3041534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.