New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3155823	47 (0.660)	3 (0.040)	3/254	NT	6.3%	coding (440/1104 nt)	PP_2771	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3155856	44 (0.650)					coding (407/1104 nt)	PP_2771	sigma‑54 dependent transcriptional regulator

GCCCGGGCGTTCTCGCAGCGGATAGAGTTGCAGGCTGACCACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3155672‑3155823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgcgTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGCAAGAGCATCCCCATCGACGTGCGCGTGGTCGCCGCCACCAACGTGCAACTGGACAAGGCCATCGCTGCCGGCAACTTCCGCGAAGACCTGTACTACCGCCTCAACGTG  <  NC_002947/3155856‑3155711                                                                                                                                                                                                                                                                                                            GCCCGGGCGTTCTCGCAGCGGATAGAGTTGCAGGCTGACCACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGC                                                                                                                                                       <  3:210080/149‑1    CGGGCGTTCTCGCAGCGGATAGAGTTGCAGGCTGACCACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCG                                                                                                                                                    <  7:406252/149‑1                                            TTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGCAA                                                                                                            <  8:33290/149‑1                                                                  CGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGC                                                                                                              <  5:196021/125‑1                                                                  CGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGC                                                                                                              >  6:196021/1‑125                                                                                                                                                      GCGTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGCAAGAGCATCCCCATCGACGTGCGCGTGGTCGCCGCCACCAACGTGCAACTGGACAAGGCCATCGCTGCCGGCAACTTCCGCGAAGACCTGTACTACCGCCTCAACGTG  >  2:260046/1‑149                                                                                                                                                                                                                                                                                                            GCCCGGGCGTTCTCGCAGCGGATAGAGTTGCAGGCTGACCACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3155672‑3155823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgcgTGCTGCAGGAGCGTGAAGTGGTGCGCCTGGGCTCGCGCAAGAGCATCCCCATCGACGTGCGCGTGGTCGCCGCCACCAACGTGCAACTGGACAAGGCCATCGCTGCCGGCAACTTCCGCGAAGACCTGTACTACCGCCTCAACGTG  <  NC_002947/3155856‑3155711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.