New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3155823	47 (0.660)	3 (0.040)	3/254	NT	6.3%	coding (440/1104 nt)	PP_2771	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3155856	44 (0.650)					coding (407/1104 nt)	PP_2771	sigma‑54 dependent transcriptional regulator

CACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGAACAGCTCGGCCT  >  NC_002947/3155711‑3156003                                                                                                                                                  |                                                                                                                                                    cACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCAcgc                                                                                                                                                  >  2:260046‑M2/1‑146 (MQ=255)             gtagtaCAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGa                                                                                                                                      >  6:166252/1‑149 (MQ=255)                gtaCAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGAcc                                                                                                                                    <  1:330410/148‑1 (MQ=255)                gtaCAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCt                                                                                                                                   >  4:40087/1‑149 (MQ=255)                  aCAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTg                                                                                                                                  >  4:308166/1‑148 (MQ=255)                   cAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTa                                                                                                                                >  5:311831/1‑149 (MQ=255)                    aGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGCCCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCTAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTAt                                                                                                                               >  4:280337/1‑149 (MQ=255)                             cgGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATggg                                                                                                                      >  6:225197/1‑149 (MQ=255)                                           aGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGAttt                                                                                                        <  2:247715/149‑1 (MQ=255)                                              gATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTtcgt                                                                                                     >  6:299512/1‑149 (MQ=255)                                                   ccTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTtcgtc                                                                                                    >  1:11215/1‑145 (MQ=255)                                                   ccTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTtcgtc                                                                                                    <  2:11215/145‑1 (MQ=255)                                                       gTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGTGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGTACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAAc                                                                                             <  1:121048/148‑1 (MQ=255)                                                        tCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAg                                                                                           >  5:108783/1‑149 (MQ=255)                                                          cAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGc                                                                                          <  5:299512/148‑1 (MQ=255)                                                               gCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTgccg                                                                                    >  6:430501/1‑149 (MQ=255)                                                                     tggtggCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCCCCGTTg                                                                              >  4:353580/1‑149 (MQ=255)                                                                      ggtggCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTg                                                                              <  3:308166/148‑1 (MQ=255)                                                                       gtggCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGcc                                                                            <  1:92362/149‑1 (MQ=255)                                                                               gACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCg                                                                     >  6:203022/1‑148 (MQ=255)                                                                                  cACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGaa                                                                   >  7:352047/1‑147 (MQ=255)                                                                                  cACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGaa                                                                   <  8:352047/147‑1 (MQ=255)                                                                                  cACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAAcc                                                                 >  8:256403/1‑149 (MQ=255)                                                                                      cgcACGTCGATGGGGATGCTCTTGCGCGAGCCTAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGcc                                                             <  3:280337/149‑1 (MQ=255)                                                                                      cgcACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGcc                                                             <  3:353580/149‑1 (MQ=255)                                                                                       gcACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCg                                                            <  3:40087/149‑1 (MQ=255)                                                                                       gcACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCg                                                            >  1:99698/1‑149 (MQ=255)                                                                                             cGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGc                                                                                                              >  2:90189/1‑93 (MQ=255)                                                                                                tGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAgcc                                                   <  5:430501/149‑1 (MQ=255)                                                                                                tGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAgcc                                                   <  6:108783/149‑1 (MQ=255)                                                                                                    gATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAgccgc                                                 >  3:223584/1‑147 (MQ=255)                                                                                                         tctTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGgcg                                          >  7:2266/1‑149 (MQ=255)                                                                                                           ttGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCAcgcgcaagagcatccccatcgacgtgcgcgtggtcgccgccaccaacgtgcaactggacaaggccatcgctgccggcaacttccgcgaagacctgtactaccgcctcaa                                        <  8:33290‑M2/149‑110 (MQ=255)                                                                                                             gcgcGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCAcgcgcaagagcatccccatcgacgtgcgcgtggtcgccgccaccaacgtgcaactggacaaggccatcgctgccggcaacttccgcg                                                              <  5:196021‑M2/125‑88 (MQ=255)                                                                                                             gcgcGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCAcgcgcaagagcatccccatcgacgtgcgcgtggtcgccgccaccaacgtgcaactggacaaggccatcgctgccggcaacttccgcg                                                              >  6:196021‑M2/1‑38 (MQ=255)                                                                                                              cgcgAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGt                                     >  3:269196/1‑149 (MQ=255)                                                                                                              cgcgAGCCCAGGCGCACCACTTCACGCACCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGt                                     >  5:359735/1‑149 (MQ=255)                                                                                                               gcgAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGcc                                                             >  6:358422/1‑124 (MQ=255)                                                                                                                  aGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAg                                 <  1:259341/149‑1 (MQ=255)                                                                                                                    cccAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGgc                               >  3:326361/1‑149 (MQ=255)                                                                                                                           gcACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTtc                        >  4:234474/1‑149 (MQ=255)                                                                                                                               cacTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGt                    >  3:328096/1‑149 (MQ=255)                                                                                                                               cacTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGt                    >  8:355526/1‑149 (MQ=255)                                                                                                                                  ttCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGc                 >  6:125070/1‑149 (MQ=255)                                                                                                                                     aCGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCg               <  3:234474/148‑1 (MQ=255)                                                                                                                                      cGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGaa             <  5:203022/149‑1 (MQ=255)                                                                                                                                      cGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGaa             <  4:269196/149‑1 (MQ=255)                                                                                                                                           cTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGAACAGCt        >  5:2794/1‑149 (MQ=255)                                                                                                                                                 caCGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGACCAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGAGCTGTTCGGcca  <  8:113207/149‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CACGTTGAGGCGGTAGTACAGGTCTTCGCGGAAGTTGCCGGCAGCGATGGCCTTGTCCAGTTGCACGTTGGTGGCGGCGACCACGCGCACGTCGATGGGGATGCTCTTGCGCGAGCCCAGGCGCACCACTTCACGCTCCTGCAGCACGCGCAACAGCTTGACCTGTATGGCCATGGGCAGGTCGCCGATTTCGTCGAGGAACAGCGTGCCGCCGTTGCCCTCCTCGAACCAGCCGGCCTTAGCCGCCAGGGCGCCGGTGAAGGCGCCTTTCTCGTGGCCGAACAGCTCGGCCT  >  NC_002947/3155711‑3156003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.