| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3433953 = | 73 (1.020) | 5 (0.070) | 5/254 | NT | 7.6% | coding (105/603 nt) | gpV | tail spike protein |
| ? | NC_002947 | 3434003 = | 53 (0.780) | coding (155/603 nt) | gpV | tail spike protein | |||||
CCGTACAGCCCCGGCACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3434105‑3433953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccgGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGACCATGTCGAGGTGT > NC_002947/3434003‑3434149 CCGTACAGCCCCGGCACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCT < 3:98791/149‑1CCGTACAGCCCCGACACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCT > 2:367345/1‑149 ACAGCCCCGGCACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCG > 3:192005/1‑149 CAGCCCCGGCACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTTCCG < 7:379320/148‑1 TGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGC > 5:426654/1‑149 CGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTG > 5:310014/1‑148 GCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGG > 7:4794/1‑148 AGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAAT < 6:310014/149‑1 ACTTCACCCATGCACTGACCCAGTCGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGC < 6:426654/149‑1 GCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGG > 7:152687/1‑102 GCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGG < 8:152687/102‑1 CTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGACCATGTCGAG < 8:362359/149‑1 CGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGACCATGTCGAGGTGT < 6:389756/149‑1 CGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGA < 3:227792/135‑1 CGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGA > 4:227792/1‑135 CCGTACAGCCCCGGCACAAATGTGCCCTGGGCAGGGTCACCGCTCGGGCTGATCAGCGCGCCCTGCTCGCCCAGGCTTGGCGACCGCCAATGGCGGGCCTTGCCGGCAGCCAGTGCATGCCACTTCACCCATGCACTGACCCAGTCGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3434105‑3433953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccgGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGTACGGCAATGCCGGCCCGCAGCCGGACAACCGCGACCATGTCGAGGTGT > NC_002947/3434003‑3434149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |