New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3433953 =	73 (1.020)	5 (0.070)	5/254	NT	7.6%	coding (105/603 nt)	gpV	tail spike protein
	?	NC_002947	3434003 =	53 (0.780)					coding (155/603 nt)	gpV	tail spike protein

GGGGAGGGGAAAGAGCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGT  >  NC_002947/3433805‑3434101                                                                                                                                                      |                                                                                                                                                         ggggaggggaAAGCGCAGCACTAGAAACATCCGGGGGCCATGGACTGAGCTACCCGACTGTGCAGCAGGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTCGCCGTGGACTTGATGGCCGGGAGGCTGCGCATgacggac                                                                                                                                                          <  5:175907/149‑1 (MQ=255)   acacctcgacatggtcgcggttgtccggctgcgggccggcattgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCg                                                                                                                                                         <  6:389756‑M1/2‑1 (MQ=255)     aggggaAAGAGCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGacggacgg                                                                                                                                                        >  2:159382/1‑147 (MQ=255)       gggaAAGAGCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑Gc                                                                                                                                                  <  7:183781/149‑1 (MQ=255)       ctcgacatggtcgcggttgtccggctgcgggccggcattgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑g                                                                                                                                                   <  8:362359‑M1/6‑1 (MQ=255)        ggaAAGAGCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCg                                                                                                                                                 >  2:66065/1‑149 (MQ=255)            agagCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGTACGGCA‑‑GCG‑ACTg                                                                                                                                            <  5:160098/149‑1 (MQ=255)            agagCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTg                                                                                                                                            >  5:13923/1‑149 (MQ=255)             gagCAGCACTATCCCCAGCCGGGGGCCATGGAATGAGCTACCCGACTGCGGAGCATGACCGCATGATTTGCGACCAGGTGA‑TCATGGGTTATGTGGTAGCCGTGGAGTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTgg                                                                                                                                           <  4:36118/149‑1 (MQ=255)             gagCAGCACTATCAACATCCGGGGGCCATGGAATGTGCTACCCGACTGCGCAGCATGACCGGATGATTTCAGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑TCTgg                                                                                                                                           <  7:282804/149‑1 (MQ=255)             gagCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTgg                                                                                                                                           <  7:366883/149‑1 (MQ=255)              agcagcACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTggg                                                                                                                                          >  2:30163/1‑149 (MQ=255)               gcagcaCTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGt                                                                                                                                         <  8:267679/149‑1 (MQ=255)               gcagcaCTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGt                                                                                                                                         <  7:287989/149‑1 (MQ=255)                 tcgcggttgtccggctgcgggccggcattgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCg                                                                                                                                                         <  3:227792‑M1/2‑1 (MQ=255)                 tcgcggttgtccggctgcgggccggcattgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCg                                                                                                                                                         >  4:227792‑M1/134‑135 (MQ=255)                   caCTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGt                                                                                                                                     <  5:222693/149‑1 (MQ=255)                   caCTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGt                                                                                                                                     <  4:1900/149‑1 (MQ=255)                      tATCAACATCCGGGGGCCATGGAATGATCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGt                                                                                                                                         <  4:40103/142‑1 (MQ=255)                      tATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGt                                                                                                                                         >  3:40103/1‑142 (MQ=255)                        tCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAt                                                                                                                                 <  7:88181/148‑1 (MQ=255)                        tCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑g                                                                                                                               >  1:25775/1‑149 (MQ=255)                          aaCATCCGGGGGCCATGGAATGAGCTACGCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑ggg                                                                                                                             >  1:248121/1‑149 (MQ=255)                          aaCATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑gg                                                                                                                              <  6:13923/148‑1 (MQ=255)                           aCATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑gcca                                                                                                                            <  8:266657/149‑4 (MQ=255)                              tCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGaa                                                                                                                         <  5:249214/149‑1 (MQ=255)                                cGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAg                                                                                                                        <  5:271766/148‑1 (MQ=255)                                cGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAg                                                                                                                        <  5:278020/148‑1 (MQ=255)                                 gcgggccggcattgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGt                                                                                                                       <  6:426654‑M1/32‑1 (MQ=255)                                  ggggCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAg                                                                                                                        >  4:373694/1‑146 (MQ=255)                                  ggggCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAg                                                                                                                        <  3:373694/146‑1 (MQ=255)                                   gggCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGc                                                                                                                    <  7:9518/149‑1 (MQ=255)                                       cATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATg                                                                                                                 >  5:337088/1‑148 (MQ=255)                                        aTGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCa                                                                                                               >  2:438141/1‑149 (MQ=255)                                         tGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCAc                                                                                                              >  4:429432/1‑149 (MQ=255)                                           attgccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACt                                                                                                             <  6:310014‑M1/42‑1 (MQ=255)                                            aaTGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTgg                                                                                                           >  7:45204/1‑149 (MQ=255)                                               ccgtacagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGc                                                                                                          >  7:4794‑M1/104‑148 (MQ=255)                                                aGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTg                                                                                                        <  1:381927/148‑1 (MQ=255)                                                    cagccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCg                                                                                                     >  5:310014‑M1/99‑148 (MQ=255)                                                    aCCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCt                                                                                                         <  8:375307/143‑1 (MQ=255)                                                    aCCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCt                                                                                                         >  7:375307/1‑143 (MQ=255)                                                    aCCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCAATGGCTGCCgg                                                                                                    >  1:367345/1‑148 (MQ=255)                                                      gccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCa                                                                                                  >  5:426654‑M1/97‑149 (MQ=255)                                                      ccGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGc                                                                                                   >  3:121637/1‑147 (MQ=255)                                                      ccGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGc                                                                                                   >  5:13104/1‑147 (MQ=255)                                                       ccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑Gc                                                                                                                                                  >  7:152687‑M1/96‑102 (MQ=255)                                                       ccccggcacaaatgtgccctgggcagggtcaccgctcgggctgatcagcgcgccctgctcgcccaggcttggcgaccgccaatggcgggccttgcCGGCA‑‑Gc                                                                                                                                                  <  8:152687‑M1/7‑1 (MQ=255)                                                        gACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGCCATTAAGCACTGAGACAGAGAAT‑GGGAGAAGTCTCAAGCACTGGCTGcccaa                                                                                                   >  1:363819/1‑145 (MQ=255)                                                                agcaTGACCGGATGATTTCCGACCAGGTGATTCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCa                                                                                        >  1:40979/1‑149 (MQ=255)                                                                    tGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGc                                                                                   <  6:337088/149‑1 (MQ=255)                                                                      aCCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCg                                                                                  <  6:13104/148‑1 (MQ=255)                                                                       ccGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGt                                                                                >  4:192005/1‑149 (MQ=255)                                                                        cGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑gg                                                                                                                              <  8:404951/102‑1 (MQ=255)                                                                        cGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑gg                                                                                                                              >  7:404951/1‑102 (MQ=255)                                                                         ggATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCg                                                                              >  6:379771/1‑149 (MQ=255)                                                                          gatgatTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGc                                                                             <  3:309079/149‑1 (MQ=255)                                                                            tgatTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCa                                                                           <  6:369157/149‑1 (MQ=255)                                                                                    gACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTggg                                                                   >  8:383103/1‑149 (MQ=255)                                                                                          gTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCa                                                             <  4:121637/149‑1 (MQ=255)                                                                                            gA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAgg                                                           >  2:293963/1‑149 (MQ=255)                                                                                             a‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAgg                                                           <  1:438141/148‑1 (MQ=255)                                                                                             a‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAgg                                                           <  2:248121/148‑1 (MQ=255)                                                                                                 aaGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAgggtca                                                       >  8:290665/1‑146 (MQ=255)                                                                                                   ggggTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGgcgcgc                                                     <  1:293963/149‑1 (MQ=255)                                                                                                         tgtgGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGAt                                                 >  3:242680/1‑147 (MQ=255)                                                                                                           tgGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGc                                             >  4:285292/1‑149 (MQ=255)                                                                                                           tgGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGc                                             >  2:432972/1‑149 (MQ=255)                                                                                                           tgGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGAAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGc                                             >  1:386253/1‑149 (MQ=255)                                                                                                                  cGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCg                                      <  8:16681/149‑1 (MQ=255)                                                                                                                   gTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCgg                                     >  1:41166/1‑149 (MQ=255)                                                                                                                       aCTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGAc                                 <  1:30163/149‑1 (MQ=255)                                                                                                                        cTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGAcc                                >  8:339245/1‑149 (MQ=255)                                                                                                                         ttGATGGCCGAGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGAccc                               >  5:404857/1‑149 (MQ=255)                                                                                                                           gATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCATCGGGTGAAGTGCCATGCACTGGCTGCCGGCAAGGCCCGCCATTGCCGGTCGCCAAGCCTGGCCCAGCAGGCCGCCCTGAACAGCCCCAGCGGTGACCCt                              >  1:108357/1‑149 (MQ=255)                                                                                                                               gCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCTGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGccc                          <  1:66065/148‑1 (MQ=255)                                                                                                                                ccGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAg                        <  4:242680/149‑1 (MQ=255)                                                                                                                                 cGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGc                                       <  6:166901/133‑1 (MQ=255)                                                                                                                                 cGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGc                                       >  5:166901/1‑133 (MQ=255)                                                                                                                                       gCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGcaca                  <  8:45204/148‑1 (MQ=255)                                                                                                                                       gCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACAt                 <  1:159382/149‑1 (MQ=255)                                                                                                                                          gcgcATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTtg              >  1:216593/1‑149 (MQ=255)                                                                                                                                           cgcATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTtgt             <  5:379771/149‑1 (MQ=255)                                                                                                                                           cgcATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTtg              <  2:25775/148‑1 (MQ=255)                                                                                                                                            gcATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGACCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTtgtg            >  3:304925/1‑149 (MQ=255)                                                                                                                                             cATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGTTGACCCTGCCCAGGGCACATTTGTGc           <  2:386253/149‑1 (MQ=255)                                                                                                                                                  cggacggCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCgggg      <  2:40979/149‑1 (MQ=255)                                                                                                                                                    gacggCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCC‑CGGCACAAATGTGccctgggca   <  2:363819/149‑8 (MQ=255)                                                                                                                                                      CGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGt  >  3:192005‑M1/1‑149 (MQ=255)                                                                                                                                                      CGGAA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTg   <  7:379320‑M1/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                         GGGGAGGGGAAAGAGCAGCACTATCAACATCCGGGGGCCATGGAATGAGCTACCCGACTGCGCAGCATGACCGGATGATTTCCGACCAGGTGA‑TCAAGGGGTATGTGGTAGCCGTGGACTTGATGGCCGGGAGGCTGCGCATGACGGACGGCA‑‑GCG‑ACTGGGTCAGTGCAT‑GGGTGAAGTGGCATGCACTGGCTGCCGGCAAGGCCCGCCATTGGCGGTCGCCAAGCCTGGGCGAGCAGGGCGCGCTGATCAGCCCGAGCGGTGACCCTGCCCAGGGCACATTTGTGCCGGGGCTGT  >  NC_002947/3433805‑3434101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.