New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3525894	45 (0.630)	3 (0.040)	3/258	NT	6.3%	coding (340/609 nt)	lexA‑II	transcriptional repressor
	?	NC_002947	= 3525911	46 (0.670)					coding (357/609 nt)	lexA‑II	transcriptional repressor

ATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3525783‑3525894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgCACCTTCAGCAGGTAGTCGGGGGTACGGCGGAACAGGCTGGGGTCGAGCAGCAACTGCTCGTGGATGCCCAGGTCCGGGCCGATGGGGGCACCCGCCGCCACCTGGCCCAGCACGGGTATTTCGAGGATTTCCGGCCGGCGCAGC  <  NC_002947/3525911‑3525767                                                                                                                                                                                                                                                                   ATCCTCGAAATACGCGTTCTGGGCCAGGTGGCGGCGGGGGGCCCCATCGGCGCGGACCTGGGCATCCACGAGCAGAGGCTGCTCTACCCCAGCCTGTTCCGCCGTACCCCCGCACCTTCAGCAGGTAGTCGGGGGTACGTCGGAACAGG                                                                                                              <  2:58609/149‑1                                                          CTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGCACCTTCAGCAGGTAGTCGGGG                                                                                                                             <  3:383613/77‑1                                                          CTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGCACCTTCAGCAGGTAGTCGGGG                                                                                                                             >  4:383613/1‑77                                                                                                             CCCGCACCTTCAGCAGGTAGTCGGGGGTACGGCGGAACAGGCTGGGGTCGAGCAGCAACTGCTCGTGGATGCCCAGGTCCGGGCCGATGGGGGCACCCGCCGCCACCTGGCCCAGCACGGGTATTTCGAGGATTTCCGGCCGGCGCAGC  >  7:11905/1‑149                                                                                                                                                                                                                                                                   ATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3525783‑3525894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgCACCTTCAGCAGGTAGTCGGGGGTACGGCGGAACAGGCTGGGGTCGAGCAGCAACTGCTCGTGGATGCCCAGGTCCGGGCCGATGGGGGCACCCGCCGCCACCTGGCCCAGCACGGGTATTTCGAGGATTTCCGGCCGGCGCAGC  <  NC_002947/3525911‑3525767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.