New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3525894	45 (0.630)	3 (0.040)	3/258	NT	6.3%	coding (340/609 nt)	lexA‑II	transcriptional repressor
	?	NC_002947	= 3525911	46 (0.670)					coding (357/609 nt)	lexA‑II	transcriptional repressor

GCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAGGCGGCAC  >  NC_002947/3525767‑3526057                                                                                                                                                 |                                                                                                                                                    gCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGcggg                                                                                                                                                 >  7:11905‑M2/1‑145 (MQ=255)       ccggccggAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACt                                                                                                                                           <  5:54768/149‑1 (MQ=255)         ggccggAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑Cg                                                                                                                                        <  4:69635/149‑1 (MQ=255)               aaaTCCTCGAAATACGCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACTAGCAGTTGCTGCTCGACCCGAGCCTGTTCCGCCGTACCCCCGACTACCTTCTGAAGGTGCGGGGCGACT‑CGATGATc                                                                                                                                  <  7:248756/149‑1 (MQ=255)                  tCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATcgac                                                                                                                               <  4:135533/149‑1 (MQ=255)                    cTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATcgacga                                                                                                                             <  6:278226/149‑1 (MQ=255)                              ccGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCttt                                                                                                                   <  3:302470/149‑1 (MQ=255)                              ccGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCttt                                                                                                                   <  5:120411/149‑1 (MQ=255)                                  gCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACg                                                                                                               <  2:243912/149‑1 (MQ=255)                                             tGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTc                                                                                                    <  7:36989/149‑1 (MQ=255)                                                 ggcggGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCa                                                                                                >  5:323670/1‑149 (MQ=255)                                                         cccccATCGGCCCGGACCTGGGCATCCAAGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCa                                                                                         >  8:347461/1‑148 (MQ=255)                                                              aTCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGc                                                                                   <  3:31424/149‑1 (MQ=255)                                                                 ggCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCg                                                                                 <  7:97363/148‑1 (MQ=255)                                                                  gCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGAc                                                                               >  2:196618/1‑149 (MQ=255)                                                                  gCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGAc                                                                               >  4:385529/1‑149 (MQ=255)                                                                  gCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTCCGGCCCGACT‑CGAAGATCGACGACGGCAACTTTGACGGTCACCTGGTCGGCATCCTGCAACAGGCCGAc                                                                               >  2:332232/1‑149 (MQ=255)                                                                    ccGGACCTGGGCATCCACGAGCAGTTGCTGCTCGCCCCCCGCCTGTTCCGCCGTACCCCCGCCTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGCCGGTGACCTGGTCGGCAGCCGGCAACAGGCCGACGc                                                                             >  7:44836/1‑149 (MQ=255)                                                                    ccGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGc                                                                             >  6:368738/1‑149 (MQ=255)                                                                      ggACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGccc                                                                           <  7:16434/149‑1 (MQ=255)                                                                      ggACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGccc                                                                           >  2:88903/1‑149 (MQ=255)                                                                        aCCTGGGCATCCACGAGCAGTTGCTGCTCGTCCCCAGACTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCcgc                                                                         >  1:36112/1‑149 (MQ=255)                                                                        aCCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCcgc                                                                         >  7:140585/1‑149 (MQ=255)                                                                                 tCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCaa                                                                <  5:399447/149‑1 (MQ=255)                                                                                        gCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTgg                                                         <  1:196618/149‑1 (MQ=255)                                                                                         cAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACggg                                                                   >  6:303996/1‑138 (MQ=255)                                                                                         cAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACggg                                                                   <  5:303996/138‑1 (MQ=255)                                                                                          aGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGAAT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAAACGTGGtt                                                       >  7:381731/1‑149 (MQ=255)                                                                                            ttGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTgc                                                     >  1:148949/1‑149 (MQ=255)                                                                                            ttGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTgc                                                     <  6:323670/149‑1 (MQ=255)                                                                                                 gctCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCACGCGACGGGCAAATCGTGGTTGCGCGcc                                                >  4:403497/1‑149 (MQ=255)                                                                                                  ctCGACCCCATCCTGTTCCGCCGTACTCCCGACTACCTGCTGAAGGTGGGGTGCTACT‑CGATGATCGACTACGGCATCTTTGACGGTGACCTGGTGGGGATCCTGCAACAGGCATACGCCCGCGACGGGCAAATCGTGTTTGCGCGCCt                                               <  4:215202/149‑1 (MQ=255)                                                                                                  ctCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGG‑TGCGCGCCt                                               <  7:347461/148‑1 (MQ=255)                                                                                                          cAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGc                                        >  1:44895/1‑148 (MQ=255)                                                                                                          cAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGc                                        >  2:211425/1‑148 (MQ=255)                                                                                                             ccTGTTCCGACGTACCCCCGACTACCTGCTGAAGGTGcgggggtacggcggaacaggctggggtagagcagcctctgctcgtggatgcccaggtccgcgccgatggggccccccgccgccacctggcccagaacgcgtatttcgaggat                                     <  2:58609‑M2/149‑113 (MQ=255)                                                                                                                   ccgccgTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGAc                                >  1:303342/1‑148 (MQ=255)                                                                                                                       cgTACCCCCGACTACCTGCTGAAGGTGCGGGGCGTCT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGTCAAATCGTGGTTGCGCGCCTGGTCGGCGAAGTGACCATCaa                          <  2:36112/149‑1 (MQ=255)                                                                                                                            ccccGCCTCCCGTCTGAAGGTGCGGGGCGACG‑CGATGATCGACGACTGCAGCTTTGACGGTGACCTGGGCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGcc                     <  8:44836/149‑1 (MQ=255)                                                                                                                            ccccGACTACCTGCTGAAGGTGcgggggtacggcggaacaggctggggtcgagcagcaactgctcgtggatgcccag                                                                                              >  4:383613‑M2/1‑22 (MQ=255)                                                                                                                            ccccGACTACCTGCTGAAGGTGcgggggtacggcggaacaggctggggtcgagcagcaactgctcgtggatgcccag                                                                                              <  3:383613‑M2/77‑56 (MQ=255)                                                                                                                            ccccGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCACCTGGACGGCGAAGTGACCATCAAACGcc                     >  7:60370/1‑149 (MQ=255)                                                                                                                              ccGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTg                   >  3:203182/1‑149 (MQ=255)                                                                                                                                gACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGc                  >  5:217638/1‑148 (MQ=255)                                                                                                                                    aCCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCt                    >  4:73719/1‑142 (MQ=255)                                                                                                                                    aCCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCt                    <  3:73719/142‑1 (MQ=255)                                                                                                                                           gAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAggcg      >  2:379374/1‑149 (MQ=255)                                                                                                                                            aaGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAggcgg     >  6:307620/1‑149 (MQ=255)                                                                                                                                            aaGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAggcgg     <  3:385529/149‑1 (MQ=255)                                                                                                                                            aaGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAggcgg     <  1:211425/149‑1 (MQ=255)                                                                                                                                            aaGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAggcgg     <  6:217638/149‑1 (MQ=255)                                                                                                                                              ggTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAGGCGGCa   <  2:148949/149‑1 (MQ=255)                                                                                                                                               gTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGACGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTCGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAGGCGGCAc  >  2:276099/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACT‑CGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTGCGCGCCTGGACGGCGAAGTGACCATCAAACGCCTGCAACGCCAAGGCGGCAC  >  NC_002947/3525767‑3526057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.