New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884242	49 (0.680)	3 (0.040)	3/254	NT	5.9%	coding (127/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884269	50 (0.740)					coding (154/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

TCAGGCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884090‑3884242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaccCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAAGGTCGACCGCGCAGAGGCTGTTGATGCCGGCGGAAGACAACAGACGTGAGGTATCCGCCGCCAGTTGTGGCGGTGCGAGGATCAAGGCACGTTCATCCAGCGCCAAC  <  NC_002947/3884269‑3884127                                                                                                                                                                                                                                                                                                          TCAGGCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCC                                                                                                                                                     <  1:160969/149‑1   AGGCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCA                                                                                                                                                    <  5:81924/148‑1    GGCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAAC                                                                                                                                                  <  1:324814/149‑1     GCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACC                                                                                                                                                 >  1:393348/1‑149                                          GCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCGGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAAG                                                                                                            <  1:140017/149‑1                                                                                     CGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAA                                                                                                             <  3:394845/105‑1                                                                                     CGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAA                                                                                                             >  4:394845/1‑105                                                                                                                                                    CCAACCCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAAGGTCGACCGCGCAGAGGCTGTTGATGCCGGCGGAAGACAACAGACGTGAGGTATCCGCCGCCAGTTGTGGCGGTGCGAGGATCAAGGCACGTTCATCCAGCGCCAAC  >  5:442770/1‑149                                                                                                                                                                                                                                                                                                          TCAGGCCACCCTGAAGGAGAGTCGTTTTGGCCAGTTCGTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884090‑3884242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaccCTGCGCCCTCGGTCAGACGCGCCTGCAGGTTGGCAAGGTCGACCGCGCAGAGGCTGTTGATGCCGGCGGAAGACAACAGACGTGAGGTATCCGCCGCCAGTTGTGGCGGTGCGAGGATCAAGGCACGTTCATCCAGCGCCAAC  <  NC_002947/3884269‑3884127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.