New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884242	49 (0.680)	3 (0.040)	3/254	NT	5.9%	coding (127/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884269	50 (0.740)					coding (154/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

GTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATC  >  NC_002947/3884127‑3884413                                                                                                                                               |                                                                                                                                                 gTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGggttgg                                                                                                                                            >  5:442770‑M2/1‑143 (MQ=255)       gcTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTACGCGGTCGACCCTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCa                                                                                                                                      <  3:243619/149‑1 (MQ=255)         tGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTTTCTTCCGCCGGCATCAACTGCCTCTGCGCGGTGGACCTTGCCAAGCTTCAGGCGCGTCTGTGCGAGGGCGCAGGGTTGGCGATCAtt                                                                                                                                    <  3:172561/149‑1 (MQ=255)           gATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGc                                                                                                                                  <  1:377745/149‑1 (MQ=255)           gATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGc                                                                                                                                  <  7:31259/149‑1 (MQ=255)            aTGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGcc                                                                                                                                 <  7:366510/149‑1 (MQ=255)            aTGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGcc                                                                                                                                 <  3:42051/149‑1 (MQ=255)                aCGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTCTCTTCCGCCGGCATCAACAGCCTCTGCCCGGTCGACCTTGCCAACCTGCAGGCGCCTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGc                                                                                                                             >  8:358937/1‑149 (MQ=255)                         gATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTc                                                                                                                     <  8:149311/148‑1 (MQ=255)                          aTCCTCGCACCGCGACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCa                                                                                                                    <  2:296987/148‑1 (MQ=255)                          aTCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCa                                                                                                                    <  6:402386/148‑1 (MQ=255)                           tCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCCACCTTGCCAAACTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGc                                                                                                                  >  7:304455/1‑149 (MQ=255)                                gCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAgg                                                                                                             <  8:226400/149‑1 (MQ=255)                                 cACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGc                                                                                                            <  6:406223/149‑1 (MQ=255)                                     gCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCaa                                                                                                        <  2:412426/149‑1 (MQ=255)                                      ccACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGACCCAAg                                                                                                       <  8:101632/149‑1 (MQ=255)                                          aaCTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAg                                                                                                       <  8:6073/145‑1 (MQ=255)                                          aaCTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAg                                                                                                       >  7:6073/1‑145 (MQ=255)                                           aCTGGCGTCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACtt                                                                                                  <  6:90784/149‑1 (MQ=255)                                               gcggcgGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTtgct                                                                                              <  2:421879/149‑1 (MQ=255)                                               gcggcgGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTtg                                                                                                <  5:260623/147‑1 (MQ=255)                                                 ggctgATACCTCACGTCTGTTGGCTTCCGCCGGCATCTACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCGAAGGCCCAAGCACTTtgctgc                                                                                            <  2:393348/149‑1 (MQ=255)                                                               gTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGAc                                                                              >  7:15066/1‑149 (MQ=255)                                                                    ttgtCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGc                                                                          >  6:439460/1‑148 (MQ=255)                                                                      gtCTTCCGCCGGCATCAACAGCCTCTGCGCGGTTGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAAc                                                                       >  6:422742/1‑149 (MQ=255)                                                                         ttCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGa                                                                    >  4:45708/1‑149 (MQ=255)                                                                           ccgccgGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAg                                                                   <  5:439460/148‑1 (MQ=255)                                                                                 gCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCTGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCg                                                            >  3:525/1‑149 (MQ=255)                                                                                    tCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGAt                                                         <  6:284534/149‑1 (MQ=255)                                                                                     cAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGAtt                                                        >  1:63403/1‑149 (MQ=255)                                                                                      aaCAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGAttt                                                       >  8:2204/1‑149 (MQ=255)                                                                                      aaCAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGAttt                                                       >  7:366784/1‑149 (MQ=255)                                                                                       aCAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTg                                                      <  1:347293/149‑1 (MQ=255)                                                                                        cAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGc                                                     <  8:309327/149‑1 (MQ=255)                                                                                               tGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATc                                                <  8:15066/147‑1 (MQ=255)                                                                                                 cgcgGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCAt                                                                                                                                     <  1:76123/60‑1 (MQ=255)                                                                                                 cgcgGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCAt                                                                                                                                     >  2:76123/1‑60 (MQ=255)                                                                                                 cgcgGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGtgc                                            >  3:307220/1‑149 (MQ=255)                                                                                                  gcgGTCGCCCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCTGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGtgct                                           <  8:304455/149‑1 (MQ=255)                                                                                                          ccTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGAcc                                    >  1:212593/1‑148 (MQ=255)                                                                                                           cTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGggttggcaaggtcgaccgcgcagaggctgttgatgccggccgaagacaacagacgtgaggtatccgccgccagttgtggcggtgcgaggatcaaggcacgttcatccagcgc                                  <  1:140017‑M2/149‑113 (MQ=255)                                                                                                            ttGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGggttggcaaggtcgaccgcgcagaggctgttgatgccggcggaagacaacagacgtgaggtatccgccg                                                                             <  3:394845‑M2/105‑70 (MQ=255)                                                                                                            ttGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGggttggcaaggtcgaccgcgcagaggctgttgatgccggcggaagacaacagacgtgaggtatccgccg                                                                             >  4:394845‑M2/1‑36 (MQ=255)                                                                                                                  aCCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGcc                           >  6:169505/1‑149 (MQ=255)                                                                                                                      gCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGTTCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGcc                           <  6:387612/145‑1 (MQ=255)                                                                                                                      gCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGCTCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGcc                           >  5:387612/1‑145 (MQ=255)                                                                                                                       cAGGCGCCTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTATGCTGCAGGCATTCATCGACCACCAACCGAGCTGGTCGGATTTGCCCATCGTGCAGCTGACCCAGGGCGCCTgag                       >  3:218439/1‑146 (MQ=255)                                                                                                                         ggCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCgg                    <  7:2204/149‑1 (MQ=255)                                                                                                                          gcgcGTCTGACCGAGGGCGCTGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGc                   <  4:525/149‑1 (MQ=255)                                                                                                                          gcgcGTCTGACCGAGGGCGCAGTGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCAGGTCGGc                   >  5:425240/1‑149 (MQ=255)                                                                                                                                   aCCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTggg            <  3:45708/147‑1 (MQ=255)                                                                                                                                   aCCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTggg            <  2:212593/147‑1 (MQ=255)                                                                                                                                   aCCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGt          <  7:246276/149‑1 (MQ=255)                                                                                                                                     cGAGCGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTg         >  6:310881/1‑148 (MQ=255)                                                                                                                                       aGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAat      >  5:282681/1‑149 (MQ=255)                                                                                                                                           cgcAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAatcatc  <  5:169505/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GTTGGCGCTGGATGAACGTGCCTTGATCCTCGCACCGCCACAACTGGCGGCGGATACCTCACGTCTGTTGTCTTCCGCCGGCATCAACAGCCTCTGCGCGGTCGACCTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATC  >  NC_002947/3884127‑3884413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.