New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3911503	64 (0.890)	4 (0.060)	4/248	NT	6.1%	coding (813/840 nt)	PP_3451	hypothetical protein
	?	NC_002947	= 3911534	65 (0.980)					intergenic (+4/‑121)	PP_3451/PP_3452	hypothetical protein/GGDEF domain‑containing protein

GTTACGAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3911346‑3911503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccctggTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGGAAC  <  NC_002947/3911534‑3911392                                                                                                                                                                                                                                                                                                               GTTACGAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTAC                                                                                                                                                          >  2:42789/1‑149      GAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCC                                                                                                                                                     >  4:2794/1‑149      GAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCC                                                                                                                                                     >  3:16857/1‑149      GAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGG‑GGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCC                                                                                                                                                    <  5:305638/149‑1          AGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGG                                                                                                                                                 <  2:44084/149‑1          AGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGG                                                                                                                                                 <  4:174922/149‑1                 GCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGACCAGGGTGGGTAGCGGGTGCCATGCCGAGGCACTGTTTGCCTTCCGCTACCGGCCCTGGTAATTCA                                                                                                                                          >  2:200330/1‑149                                                   CGCCAGGTGAGCGCGCCGGATCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGG                                                                                                        <  3:25302/149‑1                                                   CGCCAGGGGAGGGCGCCGGAGCTGGGGTTTCGGGGGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCGTTGCGCTACCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCG                                                                                                         <  1:200330/148‑1                                                     CCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTA                                                                                                      <  5:440954/149‑1                                                                                                                                                     CCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCG      >  8:137818/1‑149                                                                                                                                                     CCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCG                 <  7:138751/138‑1                                                                                                                                                     CCGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCG                 >  8:138751/1‑138                                                                                                                                                      CGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGG     <  3:12937/149‑1                                                                                                                                                      CGGCCCTGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGG     <  2:341793/149‑1                                                                                                                                                            TGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGGAAC  <  7:219588/146‑1                                                                                                                                                            TGGTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGGAAC  >  8:219588/1‑146                                                                                                                                                                                                                                                                                                               GTTACGAGCAGGCGTTGCCGTGCCGGGTGGGTGTGGTGCGCGAGGCGTTCCGCCAGGTGAGCGCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3911346‑3911503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccctggTAATTCATTGCTGTGGCAAGATACCCCGGGCCCAGGGCCGGTAGCGCAAGGCAAACACTGCCTCGGCATGGCACCCGCTACCCACCCTGGGCTCGGCGGGCTCCGCCCGAAACGCCTGCTCCGGCGCGCTCACCTGGCGGAAC  <  NC_002947/3911534‑3911392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.