New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4077627	42 (0.590)	4 (0.060)	4/256	NT	7.5%	coding (972/1188 nt)	PP_3588	Bcr/CflA family multidrug resistance transporter
	?	NC_002947	= 4077665	58 (0.850)					coding (1010/1188 nt)	PP_3588	Bcr/CflA family multidrug resistance transporter

CGCAAACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4077476‑4077627 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcaCCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGGCGGGGCGTACCAGGGTTGTCCCGGTGGTACAGACAATCATCGGCAGTAGAGCCCCCAGCACAGATAAACCTGCCACCCATTCCCACATCAAAAGGGTGATGCCC  <  NC_002947/4077665‑4077519                                                                                                                                                                                                                                                                                                             CGCAAACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCC                                                                                                                                                        >  3:386441/1‑149  GCAAACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCG                                                                                                                                                       >  1:74084/1‑149                                             GGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCACCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGC                                                                                                            >  3:187904/1‑149                                                ATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCACCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGG                                                                                                          <  3:369683/148‑1                                                ATCACCCTTTAGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCACCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGG                                                                                                          >  4:369683/1‑148                                                 TCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCACCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGGCG                                                                                                        <  4:187904/149‑1                                                                                                                                                       CACCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGGCGGGGCGTACCAGGGTTGTCCCGGTGGTACAGACAATCATCGGCAGTAGAGCCCCCAGCACAGATAAACCTGCCACCCATTCCCACATCAAAAGGGTGATGCCC  >  7:102934/1‑149                                                                                                                                                                                                                                                                                                             CGCAAACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTTTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4077476‑4077627 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcaCCTGCCTGACGCGGATAGCGCGCCAAAGCCTGGGTCGTTGCGGCGGGGCGTACCAGGGTTGTCCCGGTGGTACAGACAATCATCGGCAGTAGAGCCCCCAGCACAGATAAACCTGCCACCCATTCCCACATCAAAAGGGTGATGCCC  <  NC_002947/4077665‑4077519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.