New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 407762742 (0.590)4 (0.060) 4/256 NT 7.5% coding (972/1188 nt) PP_3588 Bcr/CflA family multidrug resistance transporter
?NC_002947 = 4077665 58 (0.850)coding (1010/1188 nt) PP_3588 Bcr/CflA family multidrug resistance transporter

ACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCA  >  NC_002947/4077481‑4077775
                                                                                                                                                     |                                                                                                                                                    
aCTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAAc                                                                                                                                                    >  6:236383/1‑149 (MQ=255)
    aaaTAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGTAAGTTATGTGTGGGGGGGGATAAAGTGCGGATTTTTTTGTTAACCACGGGGAAAACCGTGTTCCGCCCCCCCGCacac                                                                                                                                                   >  1:353270/1‑146 (MQ=255)
       tAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAg                                                                                                                                             >  8:102934/1‑149 (MQ=255)
          aaGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCt                                                                                                                                          >  4:370996/1‑149 (MQ=255)
          aaGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCt                                                                                                                                          >  3:202288/1‑149 (MQ=255)
               ggCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGgc                                                                                                                                     <  5:78243/149‑1 (MQ=255)
                     ctgctTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCt                                                                                                                                <  2:193260/148‑1 (MQ=255)
                            taAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGt                                                                                                                        <  4:202288/149‑1 (MQ=255)
                             aaGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCTCGCTATCCGCGt                                                                                                                        >  3:186302/1‑148 (MQ=255)
                              aGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTca                                                                                                                      <  2:74084/149‑1 (MQ=255)
                               gTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAAACCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGCCGCGCTATCCGCGTcag                                                                                                                     >  7:161239/1‑149 (MQ=255)
                                      gggCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGtg                                                                                                              >  7:102934‑M2/1‑147 (MQ=255)
                                       ggCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAcctgcctgacgcggatagcgcgccaaagcctgggtcgttgc                                                                                                             >  3:187904‑M1/1‑108 (MQ=255)
                                          aTCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAcctgcctgacgcggatagcgcgccaaagcctgggtcgttgcgg                                                                                                           <  3:369683‑M1/148‑44 (MQ=255)
                                          aTCACCCTTTAGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAcctgcctgacgcggatagcgcgccaaagcctgggtcgttgcgg                                                                                                           >  4:369683‑M1/1‑105 (MQ=255)
                                           tCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAcctgcctgacgcggatagcgcgccaaagcctgggtcgttgcggcg                                                                                                         <  4:187904‑M1/149‑46 (MQ=255)
                                                   ttGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCg                                                                                                   <  2:353270/147‑1 (MQ=255)
                                                      aTGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCa                                                                                               <  5:215814/148‑1 (MQ=255)
                                                       tgtgGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCaa                                                                                              >  7:325999/1‑148 (MQ=255)
                                                           ggAATGGGTGACAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACg                                                                                          <  4:146416/148‑1 (MQ=255)
                                                                  gTGGCAGGT‑‑‑TTATCTTGGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGCCCCAGGGTTTGGGGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCt                                                                                  <  1:289907/149‑1 (MQ=255)
                                                                          t‑‑‑ttATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCgccg                                                                          >  2:238456/1‑149 (MQ=255)
                                                                                  cTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCACAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCgccggtgcc                                                                     >  1:173446/1‑149 (MQ=255)
                                                                                   tgtgCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCgccggtgccg                                                                    >  5:155350/1‑149 (MQ=255)
                                                                                     tgCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCgccggtgccggt                                                                  >  4:14958/1‑149 (MQ=255)
                                                                                       cTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGtt                                                                 <  3:370996/148‑1 (MQ=255)
                                                                                          ggggCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGAc                                                             <  8:325999/149‑1 (MQ=255)
                                                                                              ctctACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAg                                                          >  8:269861/1‑148 (MQ=255)
                                                                                                     gCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTgg                                                  >  2:77557/1‑149 (MQ=255)
                                                                                                      ccGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGttt                                                                >  3:96347/1‑134 (MQ=255)
                                                                                                      ccGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGttt                                                                <  4:96347/134‑1 (MQ=255)
                                                                                                        gatgatTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGtgtg                                                   >  2:322977/1‑145 (MQ=255)
                                                                                                        gatgatTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGtgtg                                                   <  1:322977/145‑1 (MQ=255)
                                                                                                             ttGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTACTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGt                                          >  8:296094/1‑149 (MQ=255)
                                                                                                              tGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGt                                                 >  8:147463/1‑141 (MQ=255)
                                                                                                              tGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGt                                                 <  7:147463/141‑1 (MQ=255)
                                                                                                                    tACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTgg                                      <  4:386441/146‑1 (MQ=255)
                                                                                                                      ccaccGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGc                                 >  8:190369/1‑149 (MQ=255)
                                                                                                                          cGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGc                             >  7:96126/1‑149 (MQ=255)
                                                                                                                                  cccTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTAccggcc                     >  1:51110/1‑149 (MQ=255)
                                                                                                                                    cTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTAccggcc                     <  4:274520/147‑1 (MQ=255)
                                                                                                                                    cTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTAccggcc                     >  3:274520/1‑147 (MQ=255)
                                                                                                                                       gTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCt                 <  1:238456/148‑1 (MQ=255)
                                                                                                                                          cGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTggg             >  6:46836/1‑149 (MQ=255)
                                                                                                                                          cGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTACTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTgg              <  7:296094/148‑1 (MQ=255)
                                                                                                                                           gCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGc            >  1:280132/1‑149 (MQ=255)
                                                                                                                                             cccGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGt          >  4:206364/1‑149 (MQ=255)
                                                                                                                                             cccGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGt          <  4:217894/149‑1 (MQ=255)
                                                                                                                                               cgccgcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGtgcggcggggcgtaccagggttgtcccggtggtacagacaatcatcggcagtagagcccccagcacagataaacctgccacccattcccacatcaaaagggtga        <  4:187904‑M2/149‑105 (MQ=255)
                                                                                                                                               cgccgcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGACGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAATCGAGCTACCGGCCGGCTTGGGCGTGc        >  2:352001/1‑149 (MQ=255)
                                                                                                                                                 ccgcAACGACCCAGGCTTTGGCGCGCTATCCTCGTCAGGCAGGTGCGGCAGCGTCTCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTg      <  4:186302/149‑1 (MQ=255)
                                                                                                                                                 ccgcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGtgcggcggggcgtaccagggttgtcccggtggtacagacaatcatcggcagtagagcccccagcacagataaacctgccacccattcccacatctaaagggtgat       >  4:369683‑M2/1‑43 (MQ=255)
                                                                                                                                                 ccgcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGtgcggcggggcgtaccagggttgtcccggtggtacagacaatcatcggcagtagagcccccagcacagataaacctgccacccattcccacatcaaaagggtgat       <  3:369683‑M2/148‑106 (MQ=255)
                                                                                                                                                   gcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGtgcggcggggcgtaccagggttgtcccggtggtacagacaatcatcggcagtagagcccccagcacagataaacctgccacccattcccacatcaaaagggtgatgcc    >  3:187904‑M2/1‑41 (MQ=255)
                                                                                                                                                   gcAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGtt    <  1:77557/149‑1 (MQ=255)
                                                                                                                                                    cAcctgcctgacgcggatagcgcgccaaagcctgggtcgttgcggcggggcgtaccagggttgtcccggtggtacagacaatcatcggcagtagagcccccagcacagataaacctgccacccattcccacatcaaaagggtgatgccc   >  7:102934‑M1/1‑2 (MQ=255)
                                                                                                                                                     aaCGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCa  >  3:380550/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
ACTCAAATAAAAGCAGGCTTGCTGCTTATAAGTACTGCGGGCATCACCCTTTTGATGTGGGAATGGGTGGCAGGT‑‑‑TTATCTGTGCTGGGGGCTCTACTGCCGATGATTGTCTGTACCACCGGGACAACCCTGGTACGCCCCGCCGCAACGACCCAGGCTTTGGCGCGCTATCCGCGTCAGGCAGGTGCGGCAGCGTCGCTCAATACGACATTGCTGTTCGCCGGTGCCGGTTTGACGAGCAGTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCA  >  NC_002947/4077481‑4077775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.