New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 513737574 (1.030)5 (0.070) 5/256 NT 6.6% coding (227/894 nt) PP_4522 LysR family transcriptional regulator
?NC_002947 = 5137408 70 (1.020)coding (194/894 nt) PP_4522 LysR family transcriptional regulator

GGGTGCTCCTGGCTGTAGGCACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5137225‑5137375
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCGTT  <  NC_002947/5137408‑5137261
                                                                                                                                                                                                                                                                                                           
GGGTGCTCCTGGCTGTAGGCACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAG                                                                                                                                                        <  3:9140/149‑1
  GTGCTCCTGGCTGTAGGCACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAG                                                                                                                                                        >  4:346753/1‑147
                  GCACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCAAGGGCGAGCTGTTCCA                                                                                                                                      >  1:129277/1‑149
                    ACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCAAGGGCGAGCTGTTCCATC                                                                                                                                    <  5:277945/149‑1
                                       GGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCT                                                                                                                 <  2:129277/149‑1
                                                       CGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGC                                                                                                              <  1:338871/136‑1
                                                       CGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGC                                                                                                              >  2:338871/1‑136
                                                                                                                                                 CCAGCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTG       <  3:172333/149‑1
                                                                                                                                                   AGCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCC     >  8:406701/1‑149
                                                                                                                                                    GCAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCG    >  2:108689/1‑149
                                                                                                                                                     CAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCGT   >  2:6557/1‑149
                                                                                                                                                     CAAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCGT   >  2:97626/1‑149
                                                                                                                                                      AAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCGTT  >  2:182776/1‑149
                                                                                                                                                                                                                                                                                                           
GGGTGCTCCTGGCTGTAGGCACCGATGGCTTCGGCCAACGGCAAGGCGCGATCACCGACGGTGGAGTCGATCACCCCAAGGTTGAGGGTGCCACGCAGTTCGCCCTTCAGGGCGGCGGCATACTGCTCGAAACCGTCCAGCTCGGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5137225‑5137375
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaAGGGCGAGCTGTTCCATCAGGAAACCCTGCGCCTGCTGGCCGAGCTGGACGGTTTCGAGCAGTATGCCGCCGCCCTGAAGGGCGAACTGCGTGGCACCCTCAACCTTGGGGTGATCGACTCCACCGTCGGTGATCGCGCCTTGCCGTT  <  NC_002947/5137408‑5137261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.