New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594092 =	9 (0.130)	12 (0.210)	8/212	NT	49.9%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	17 (0.300)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

CAAGGCATGCGTGAGCAGGCCGAGCGGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5594263‑5594092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctcccacagggtAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGA  >  NC_002947/5594185‑5594332                                                                                                                                                                                                                                                                                                                                   CAAGGCATGCGTGAGCAGGCCGAGCGGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGC                                                                                                                                                                              <  6:106195/149‑1   AGGCATGCGTGAGCAGGCCGAGCGGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                                            <  7:169323/149‑1   AGGCATGCGTGAGCAGGCCGAGCGGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                                            <  5:35044/149‑1        TGCGTGAGCAGGCCGAGCGGTTCCTCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAG                                                                                                                                                                       <  8:322406/149‑1                                                                 AAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                                                                                        >  8:401223/1‑91                                                                 AAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                                                                                        <  7:401223/91‑1                                                                                                   GCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGC                                                                           >  5:315909/1‑149                                                                                                   GCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCC                                                                          >  3:342592/1‑149                                                                                                     CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCT                                                                         >  8:338443/1‑149                                                                                                     CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCT                                                                         >  6:434018/1‑149                                                                                                     CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACAGCTCGGCCTGCTCACGCATGCCT                                                                         >  4:389217/1‑149                                                                                                      CGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTT                                                                        >  7:131771/1‑149                                                                                                      CGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTT                                                                        >  8:52213/1‑149                                                                                                       GCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTG                                                                       >  2:56455/1‑149                                                                                                        CGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGC                                                                      >  5:214150/1‑149                                                                                                           AGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCG                                                                   <  6:315909/149‑1                                                                                                             CAAGCACTGCGGTGCATGGCACCGGCTTTGCTTG‑CTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGATGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACC                                                                >  5:340606/1‑149                                                                                                                               GCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTC                                               <  7:52213/149‑1                                                                                                                                                 TTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGATACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACT                              >  1:332529/1‑148                                                                                                                                                  TCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCA                            >  4:84999/1‑149                                                                                                                                                   CGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTC                             <  8:169323/147‑1                                                                                                                                                     CGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGC                         <  6:214150/149‑1                                                                                                                                                            GCCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCT                  <  8:131771/149‑1                                                                                                                                                             CCCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTG                 >  3:198831/1‑149                                                                                                                                                              CCGCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGG                <  5:106195/149‑1                                                                                                                                                                GCTCCCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGT              <  8:85873/149‑1                                                                                                                                                                GCTCCCACACGGTAAGGTC‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATCCCTTGCTCGACCGTCACATCCACGGCCTCGAACATGGCAGCCTACTCACTCACTTACTGGct              >  6:412929/1‑147                                                                                                                                                                    CCACAGTGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGA            <  2:135678/147‑1                                                                                                                                                                    CCACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATC          <  2:347838/149‑1                                                                                                                                                                      ACAGGGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTT        >  5:330669/1‑149                                                                                                                                                                          GGTAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGATGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATC    <  6:340606/149‑1                                                                                                                                                                            TAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGA  <  1:56455/149‑1                                                                                                                                                                                                                                                                                                                                   CAAGGCATGCGTGAGCAGGCCGAGCGGTTCCGCCAGGAAGGCAGCCAGCTGTACCACAAAGTCTAAACCGCAGCACCTTACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5594263‑5594092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctcccacagggtAAGGTG‑CTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGA  >  NC_002947/5594185‑5594332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.