New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816767	74 (1.030)	4 (0.060)	4/256	NT	5.6%	coding (577/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816800	65 (0.950)					coding (610/624 nt)	PP_5092	NLP/P60 protein

GACCTGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816614‑5816767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACGT  <  NC_002947/5816800‑5816654                                                                                                                                                                                                                                                                                                               GACCTGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAATCGGGTGAGTATCGACAGCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGT                                                                                                                                                          <  3:18572/149‑1   CCTGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCTCGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGG                                                                                                                                                        <  7:339202/149‑1   CCTGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGG                                                                                                                                                        >  5:37712/1‑149     TGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCCTCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGC                                                                                                                                                       >  6:128684/1‑148       ATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCC                                                                                                                                                      <  3:261193/147‑1                    TCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAGACTCAGCTGCTGC                                                                                                                                       >  6:386441/1‑149                                                CATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCA                                                                                                           <  5:386441/149‑1                                                                         ATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACC                                                                                                            >  3:401153/1‑123                                                                         ATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACC                                                                                                            <  4:401153/123‑1                                                                                                                                                      GGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCT      <  7:96247/148‑1                                                                                                                                                      GGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCT      <  7:155427/148‑1                                                                                                                                                       GCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTA     <  6:353683/148‑1                                                                                                                                                        CCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACG   >  2:262333/1‑149                                                                                                                                                        CCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACG   >  2:55291/1‑149                                                                                                                                                        CCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACG   >  1:148875/1‑149                                                                                                                                                        CCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGG        <  7:375104/144‑1                                                                                                                                                        CCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGG        >  8:375104/1‑144                                                                                                                                                         CAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACGT  >  8:106915/1‑149                                                                                                                                                                                                                                                                                                               GACCTGATCTTCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816614‑5816767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCACGTAGTGCTTCTGCCAGTAAGGCTTGCTCAAGGTGTCGATACTCACCCGCTTGCCACGGCGTGGAGCGTGGATGAAGCGGTCGTTACCCAGGTAGATGGCTACGT  <  NC_002947/5816800‑5816654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.