New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816767	74 (1.030)	4 (0.060)	4/256	NT	5.6%	coding (577/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816800	65 (0.950)					coding (610/624 nt)	PP_5092	NLP/P60 protein

TCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAG  >  NC_002947/5816652‑5816939                                                                                                                                                         |                                                                                                                                             tCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTc                                                                                                                                              >  2:358672/1‑149 (MQ=255) tCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTc                                                                                                                                              >  5:38837/1‑149 (MQ=255)   aCGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtg                                                                                                                                            >  8:106915‑M2/1‑147 (MQ=255)    cGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtgg                                                                                                                                           >  2:55291‑M2/1‑146 (MQ=255)    cGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtgg                                                                                                                                           >  1:148875‑M2/1‑146 (MQ=255)    cGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtgg                                                                                                                                           >  2:262333‑M2/1‑146 (MQ=255)      tAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggc                                                                                                                                          <  6:353683‑M2/148‑5 (MQ=255)       aGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggcc                                                                                                                                         <  7:155427‑M2/148‑6 (MQ=255)       aGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggcc                                                                                                                                         <  7:96247‑M2/148‑6 (MQ=255)         ccATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtgg                                                                                                                                           <  7:375104‑M2/144‑4 (MQ=255)         ccATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtgg                                                                                                                                           >  8:375104‑M2/1‑141 (MQ=255)               aCCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGtt                                                                                                                                  >  4:295546/1‑147 (MQ=255)                ccTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGtt                                                                                                                                  <  1:72771/146‑1 (MQ=255)                 cTGTGTAACGACCGCTTCCTCAACGCTCCACGCCGGTGCAAGCGGGGGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTTGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGc                                                                                                                              <  8:356219/149‑1 (MQ=255)                 cTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGc                                                                                                                              <  5:224496/149‑1 (MQ=255)                 cTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAACCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGc                                                                                                                              <  5:374647/149‑1 (MQ=255)                    ggTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCt                                                                                                                             <  8:96247/147‑1 (MQ=255)                     gTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGAt                                                                                                                          >  5:265445/1‑149 (MQ=255)                      tAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATc                                                                                                                         >  3:160023/1‑149 (MQ=255)                          gACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGa                                                                                                                           <  2:365443/143‑1 (MQ=255)                          gACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGa                                                                                                                           >  1:365443/1‑143 (MQ=255)                          gACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑gcg                                                                                                                    >  8:15014/1‑149 (MQ=255)                                     ccacgctccacgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTAc                                                                                                         >  8:197398/1‑149 (MQ=255)                                      cacgctccacgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTAcc                                                                                                        >  7:336429/1‑149 (MQ=255)                                      cacgctccacgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTAc                                                                                                         <  3:295546/148‑1 (MQ=255)                                         gctccacgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGc                                                                                                     <  6:37712/149‑1 (MQ=255)                                             cacgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCt                                                                                                 >  4:351264/1‑149 (MQ=255)                                              acgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGAAGCAGCTGAGTCTGGCCACGCGTTAAGCTGATCG‑GCGCTATACGGTACCGGCCCCtt                                                                                                >  4:319960/1‑149 (MQ=255)                                               cgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTAGTGGCAGAACCCTACTGATTCTTTTTATTAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGccc                                                                                                   <  1:358672/149‑1 (MQ=255)                                                  cGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGTGCGCTATCCGGTACCGGCCCCTTcgc                                                                                             <  1:225616/149‑1 (MQ=255)                                                    tGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCggg                                                                                          >  3:215633/1‑149 (MQ=255)                                                     ggCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGc                                                                                         <  6:369716/149‑1 (MQ=255)                                                      gCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCa                                                                                        <  8:155427/149‑1 (MQ=255)                                                         aGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGc                                                                                     <  4:17340/149‑1 (MQ=255)                                                          gCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGcc                                                                                    <  6:38837/149‑1 (MQ=255)                                                          gCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGcc                                                                                    <  6:249911/149‑1 (MQ=255)                                                           cGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGccc                                                                                   >  4:39543/1‑149 (MQ=255)                                                             ggTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGc                                                                                 >  3:226821/1‑149 (MQ=255)                                                                  gTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCca                                                                            >  3:170196/1‑149 (MQ=255)                                                                  gTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCca                                                                            <  5:128684/149‑1 (MQ=255)                                                                   tATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCcac                                                                           <  5:353683/149‑1 (MQ=255)                                                                   tATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCca                                                                            >  3:316987/1‑148 (MQ=255)                                                                         cacCTTGATGAAGCCTTACTGGCAGAAGC‑‑AGT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAg                                                                     <  4:40085/149‑1 (MQ=255)                                                                          acCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAgc                                                                    <  8:336429/149‑1 (MQ=255)                                                                            cTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAgcgc                                                                  <  4:170196/149‑1 (MQ=255)                                                                                 gCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCggg                                                                                          <  3:105390/120‑1 (MQ=255)                                                                                 gCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCggg                                                                                          >  4:105390/1‑120 (MQ=255)                                                                                 gCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGc                                                             >  1:392616/1‑149 (MQ=255)                                                                                  aaaGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCATCGct                                                            <  7:181984/148‑1 (MQ=255)                                                                                   atcccTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTCAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGctc                                                           <  3:211726/146‑1 (MQ=255)                                                                                          aCTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgc                                                     <  4:215633/148‑1 (MQ=255)                                                                                          aCTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgc                                                     <  2:105505/148‑1 (MQ=255)                                                                                           cTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgcg                                                    <  4:226821/148‑1 (MQ=255)                                                                                           cTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCgcgcgc                                                   <  3:298497/149‑1 (MQ=255)                                                                                              gCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGc                                                <  6:265445/149‑1 (MQ=255)                                                                                                aGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc                                              <  4:160023/149‑1 (MQ=255)                                                                                                  aaGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTcac                                            <  7:197398/149‑1 (MQ=255)                                                                                                     c‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCTCGTCGCTCTCGCGCGCAGCTCACATa                                         <  3:39543/149‑1 (MQ=255)                                                                                                         cT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATAc                                        >  1:43488/1‑148 (MQ=255)                                                                                                         cT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATAc                                        <  2:43488/148‑1 (MQ=255)                                                                                                          t‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgcg                                                    >  3:224946/1‑135 (MQ=255)                                                                                                          t‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgcg                                                    <  4:224946/135‑1 (MQ=255)                                                                                                          t‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCt                                      <  2:392616/149‑1 (MQ=255)                                                                                                          t‑A‑CGTGCTCGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTATGGCCAATCGTTAACCTGATCG‑GCGCTATCCGGTACCTGCCCCTTATCGGGCACCCCCGCTCCCACCCCAATCTCCACGCTCTCTCGCGCAGCTCacctacct                                      >  4:66103/1‑149 (MQ=255)                                                                                                               gtggtgGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCtgtg                                   <  4:364755/149‑1 (MQ=255)                                                                                                                tggtggCCAAGGGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTgg                                  <  3:66103/149‑1 (MQ=255)                                                                                                                tggtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggatgaagcggtcgttacccaggtagatg                                   <  5:386441‑M2/149‑108 (MQ=255)                                                                                                                tggtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTgg                                  <  3:351264/149‑1 (MQ=255)                                                                                                                 ggtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggat                                                            >  3:401153‑M2/1‑41 (MQ=255)                                                                                                                 ggtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggat                                                            <  4:401153‑M2/123‑83 (MQ=255)                                                                                                                   tggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAg                               <  6:24776/149‑1 (MQ=255)                                                                                                                        aaGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGgc                          <  4:316987/149‑1 (MQ=255)                                                                                                                          gCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCcac                                                                           >  2:224392/1‑98 (MQ=255)                                                                                                                          gCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCcac                                                                           <  1:224392/98‑1 (MQ=255)                                                                                                                                            gcagcagcTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggatgaagcggtcgttacccaggtagatggctacgtgattgacccgacggctcttga       >  6:386441‑M2/1‑14 (MQ=255)                                                                                                                                            gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGcc                                                                                    >  2:263864/1‑71 (MQ=255)                                                                                                                                            gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGcc                                                                                    <  1:263864/71‑1 (MQ=255)                                                                                                                                              agcagcTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGc                                                                                                     >  7:168166/1‑52 (MQ=255)                                                                                                                                              agcagcTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGc                                                                                                     <  8:168166/52‑1 (MQ=255)                                                                                                                                                cagcTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg  <  5:319688/149‑1 (MQ=255)                                                                                                                                                         |                                                                                                                                             TCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGC‑‑ACT‑A‑CGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCG‑GCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAG  >  NC_002947/5816652‑5816939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.