New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6055813 =	71 (0.990)	4 (0.060)	4/244	NT	6.1%	intergenic (+34/‑61)	tonB/oxyR	TonB energy transducing system subunit TonB/oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	6055876 =	59 (0.910)					coding (3/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

CAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6055969‑6055813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA  >  NC_002947/6055876‑6056019                                                                                                                                                                                                                                                                                                               CAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACG                                                                                                                                                          <  8:330576/149‑1    GGTGGGTTGGCTCCCGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCAC                                                                                                                                                       <  4:266255/149‑1    GGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCAC                                                                                                                                                       <  8:214550/149‑1    GGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCAC                                                                                                                                                       >  7:136341/1‑149       GGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGT                                                                                                                                                     >  2:102948/1‑148         GTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTAT                                                                                                                                                  <  5:192382/149‑1           TGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTAT                                                                                                                                                  >  2:186186/1‑147           TGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTAT                                                                                                                                                  >  4:82749/1‑147                                                                                                  ACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCA                                                         >  2:295177/1‑149                                                                                                   CGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGCCTGCAATCGATAGACGCACGTTATGAACCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCAAGCAGCAGAGCGCAGTCACGTCAGCCAACCCAC                                                        >  8:259136/1‑149                                                                                                       CGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTAGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTG                                                    >  5:209713/1‑149                                                                                                                     CGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTAGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGA                                       <  6:209713/148‑1                                                                                                                                                  GACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGA         <  4:136445/149‑1                                                                                                                                                  GACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAG                            <  6:154867/130‑1                                                                                                                                                  GACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAG                            >  5:154867/1‑130                                                                                                                                                  GACGCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCAAGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTG          <  2:269805/148‑1                                                                                                                                                     GCACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCT      >  8:45900/1‑149                                                                                                                                                       ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGTCTAGCTTGGCGTTCTGATCTTC    <  4:26628/149‑1                                                                                                                                                       ACGTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC    >  5:104286/1‑149                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA  <  8:293385/149‑1                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTC    >  1:421863/1‑147                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGAC                         >  4:270926/1‑126                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGAC                         <  3:270926/126‑1                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTAGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA  >  7:232815/1‑149                                                                                                                                                         GTTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACATCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA  <  5:424260/149‑1                                                                                                                                                          TTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGA                                                                  <  1:155433/84‑1                                                                                                                                                          TTATGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGA                                                                  >  2:155433/1‑84                                                                                                                                                                                                                                                                                                               CAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTTCCTGGGCGAGTGTGACGATGTAGCGTAATTCTGTAAGGGTCATAACGTGCGTCCATGAAGTTGCGGGCCCAGCATAGCGGCTGCAATCGATAGACGCACGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6055969‑6055813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcacgttatGACCCTTACAGAATTACGCTACATCGTCACACTCGCCCAGGAACAGCACTTCGGCCATGCCGCCGAGCGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGA  >  NC_002947/6055876‑6056019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.