New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6086740	99 (1.380)	6 (0.090)	5/256	NT	5.7%	coding (262/1071 nt)	oruR	ornithine utilization transcriptional regulator
	?	NC_002947	= 6086765	103 (1.510)					coding (287/1071 nt)	oruR	ornithine utilization transcriptional regulator

GCAGTTTCGCTGATCCTCAACGTCTTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6086587‑6086740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGACGCCTCGCAACCGTCT  <  NC_002947/6086765‑6086619                                                                                                                                                                                                                                                                                                               GCAGTTTCGCTGATCCTCAACGTCTTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGT                                                                                                                                                          >  5:30857/1‑149   AGTTTCGCTGATCCTCAACGTCTTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGG                                                                                                                                                        <  3:186011/149‑1     TTTCGCTGATCCTCAACGTCTTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCC                                                                                                                                                      >  3:4972/1‑149                         TTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCT                                                                                                                                  >  2:203544/1‑149                            CAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCTCGC                                                                                                                               >  6:433359/1‑149                                       TTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACA                                                                                                                    <  5:433359/149‑1                                             GGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTG                                                                                                              <  1:203544/149‑1                                                                              CCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACA                                                                                                                    >  3:21143/1‑110                                                                              CCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACA                                                                                                                    <  4:21143/110‑1                                                                                                                                                         CCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGCCGCCTCGCAACCGTCT  >  3:272186/1‑149                                                                                                                                                         CCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGACGCCTCGCAACCGTCT  >  2:213032/1‑149                                                                                                                                                         CCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGACGCCTCGCAACCGTCT  >  5:139937/1‑149                                                                                                                                                         CCAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGACGCCTCGCAACCGTCT  <  6:44397/149‑1                                                                                                                                                                                                                                                                                                               GCAGTTTCGCTGATCCTCAACGTCTTCCAGGCAGACGGTTGCGAGGCGTCGGCGTTGCTGGCCGGCAGCGGCATTGGCCCGGCAGACCTGGGGCATGCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTTTGCGCCAATGCTGTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6086587‑6086740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccAGTTCCAGGCCAATGTCCTCGCGCCGGGCCACAGCATTGGCGCAAACCTGCAGCTCCTGCTGGGTGGTGATGCGCGCATCGGCATGCCCCAGGTCTGCCGGGCCAATGCCGCTGCCGGCCAGCAACGCCGACGCCTCGCAACCGTCT  <  NC_002947/6086765‑6086619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.