New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4121661	53 (0.740)	4 (0.060)	4/250	NT	7.8%	coding (126/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	= 4121682	45 (0.670)					coding (105/789 nt)	PP_3624	hypothetical protein

CTCGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGC  >  NC_002947/4121540‑4121824                                                                                                                                               |                                                                                                                                                 cTCGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGcctgtg                                                                                                                                            >  5:355967‑M2/1‑143 (MQ=255)    gTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGcctgtggcg                                                                                                                                         >  6:149674‑M2/1‑140 (MQ=255)     tGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑Cgg                                                                                                                                       >  4:187291/1‑149 (MQ=255)     tGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑Cgg                                                                                                                                       >  4:180545/1‑149 (MQ=255)         cACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAg                                                                                                                                   >  8:54423/1‑149 (MQ=255)           cGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGcc                                                                                                                                 >  1:179294/1‑149 (MQ=255)                        accaccTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGgcatgcat                                                                                                                     >  1:115735/1‑148 (MQ=255)                           accTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCatcatc                                                                                                                 <  6:74621/149‑1 (MQ=255)                                tATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGc                                                                                                              <  7:12166/147‑1 (MQ=255)                                  tctcCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTg                                                                                                            <  2:115735/147‑1 (MQ=255)                                     ccAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGgcatgc                                                                                                                       >  2:92734/1‑133 (MQ=255)                                     ccAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGgcatgc                                                                                                                       <  1:92734/133‑1 (MQ=255)                                     ccAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTg                                                                                                         >  2:77930/1‑147 (MQ=255)                                      cAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGc                                                                                                        <  1:317179/147‑1 (MQ=255)                                                  cTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGgca‑g                                                                                           <  8:74542/147‑1 (MQ=255)                                                   ttGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGca‑gcag                                                                                        >  2:180494/1‑149 (MQ=255)                                                      cccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGcctgtgg                                                                                                                                           >  5:291172‑M2/1‑90 (MQ=255)                                                      cccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGcctgtgg                                                                                                                                           <  6:291172‑M2/97‑8 (MQ=255)                                                       ccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCTCAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGa                                                                                     >  4:340700/1‑148 (MQ=255)                                                       ccAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGa                                                                                     >  6:122095/1‑148 (MQ=255)                                                        cAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACa                                                                                   <  7:20349/149‑1 (MQ=255)                                                          ggTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAgg                                                                                 <  7:169784/149‑1 (MQ=255)                                                           gTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGGTCGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAgg                                                                                 <  1:120147/149‑1 (MQ=255)                                                           gTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTGCAGCGGGTCGCGCCTCAGGTTCGTGTGGTATTCCGGGTTGCGTGTGG‑CTGTCAGCCGTAGGCATGCATCATCCGGTGTTGGAGCGAGGGGCA‑GCAGTGACAGGc                                                                                <  8:2224/149‑1 (MQ=255)                                                              tttGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGcac                                                                              <  6:58120/148‑1 (MQ=255)                                                                tGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAggg                                                                                                >  2:159653/1‑129 (MQ=255)                                                                tGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACAt                                                                            >  1:367293/1‑148 (MQ=255)                                                                   gCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAgg                                                                        <  1:175154/149‑1 (MQ=255)                                                                           gCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGAc                                                                <  2:179294/149‑1 (MQ=255)                                                                              ttGGAACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTg                                                             <  7:67615/149‑1 (MQ=255)                                                                                      gATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCATCCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAg                                                      <  1:77930/149‑1 (MQ=255)                                                                                        tCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCaa                                                   <  6:432668/149‑1 (MQ=255)                                                                                          aGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAAc                                                  <  1:180494/148‑1 (MQ=255)                                                                                           gTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGc                                                >  1:171/1‑149 (MQ=255)                                                                                              gCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTc                                              >  1:167460/1‑148 (MQ=255)                                                                                              gCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAAGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTc                                              >  6:352980/1‑148 (MQ=255)                                                                                                  aGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGatca                                         >  2:327277/1‑149 (MQ=255)                                                                                                  aGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGat                                           <  2:367293/147‑1 (MQ=255)                                                                                                   gggTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGatcat                                        <  7:54423/149‑1 (MQ=255)                                                                                                    ggTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGatcatc                                       >  6:207237/1‑149 (MQ=255)                                                                                                        cAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTAc                                    <  2:167460/148‑1 (MQ=255)                                                                                                             ggTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCt                              >  4:124871/1‑149 (MQ=255)                                                                                                               tCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCg                            >  8:54928/1‑149 (MQ=255)                                                                                                               tCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCg                            >  3:277772/1‑149 (MQ=255)                                                                                                                 gcgcCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACTTCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCgg                           <  1:327277/148‑1 (MQ=255)                                                                                                                  cgcCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGca                         <  2:171/149‑1 (MQ=255)                                                                                                                   gcCACAGGTACGGGGGGTATTCCGGGTTGcctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtttacgccgggcc                                   <  1:283455‑M2/140‑112 (MQ=255)                                                                                                                   gcCACAGGTACGGGGGGTATTCCGGGTTGcctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaatgccgacctgctcaaatacctgggcaagcagttggggctggagatagaggtggtttacgccgggcc                                   >  2:283455‑M2/1‑29 (MQ=255)                                                                                                                    ccACAGGTACGGGGGGTATTCCGGGTTGcctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaat                                                                                                    <  7:199790‑M2/74‑47 (MQ=255)                                                                                                                    ccACAGGTACGGGGGGTATTCCGGGTTGcctgtggcgcgacccgctgaaccctcagcgactgatcggtgccaat                                                                                                    >  8:199790‑M2/1‑28 (MQ=255)                                                                                                                    ccACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcaca                       >  7:218262/1‑149 (MQ=255)                                                                                                                    ccACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGcaca                       >  5:342295/1‑149 (MQ=255)                                                                                                                             cGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAacac               <  5:207237/148‑1 (MQ=255)                                                                                                                                 gggTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCCGc          >  5:364998/1‑149 (MQ=255)                                                                                                                                         cGGGTTGCCTGTGG‑CTGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGc  <  3:340700/149‑1 (MQ=255)                                                                                                                                         cGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCgg   <  5:122095/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 CTCGTGACCACGGCCCGGCGTAAACCACCTCTATCTCCAGCCCCAACTGCTTGCCCAGGTATTTGAGCAGGTCGGCATTGGCACCGATCAGTCGCTGAGGGTTCAGCGGGTCGCGCCACAGGTACGGGGGGTATTCCGGGTTGCCTGTGG‑CGGTCAGCCGTAGGCATGCATCATCCGCTGTTGCAGCCAGGGGCA‑GCAGTGACAGGCACATCAGGAGCAAGACGTGGCGAAAGCAACGCTCGATCATCTACGACCCTCGGCACATGAAACACCCGGCGATCCGGC  >  NC_002947/4121540‑4121824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.