New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 965454	45 (0.860)	4 (0.080)	4/250	NT	9.5%	coding (436/768 nt)	ptxC	phosphonate transport system permease PtxC
	?	NC_002947	= 965474	34 (0.700)					coding (456/768 nt)	ptxC	phosphonate transport system permease PtxC

GTTGGCCGTTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/965299‑965454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgttCTCAAGCGCCTCGGCAAACAAACGCCCCAGCACGCCAGCGGTGTGC  <  NC_002947/965474‑965429                                                                                                                                                                                                            GTTGGCCGTTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTG                                                       >  5:60911/1‑149   gccCCGTTGCAAGGGGCCGCGCGGCTGCTGCTCACTGCCTTTCGTGCCATTCCTGATCTGTTGTGTGCAGCGCTGACTGTGCTGTCGGCGGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCTTTGCACACCGCTGGCGTGCTGGG                                                     <  6:317155/146‑1    GGCCGTTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGG                                                     <  4:105182/148‑1       CGTTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGT                                                 >  3:143642/1‑149                                                       CTGAACTGTTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTCTCAAGCGCCTCGGCAAACAAACGCCCCAGCACGCCAGCGGT      <  5:323405/144‑1                                                       CTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCGTGGGGGTTATAAAGCGCCACGGCAAAAAAACGCCCCAGCACGCCACCGGTGaga  >  6:323405/1‑145                                                                                            TGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTCTCAAGCGCCTCGGCAAACAAACGCCC                     <  5:313949/92‑1                                                                                            TGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTCTCAAGCGCCTCGGCAAACAAACGCCC                     >  6:313949/1‑92                                                                                                                                                                                                            GTTGGCCGTTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/965299‑965454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgttCTCAAGCGCCTCGGCAAACAAACGCCCCAGCACGCCAGCGGTGTGC  <  NC_002947/965474‑965429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.