New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 96545445 (0.860)4 (0.080) 4/250 NT 9.5% coding (436/768 nt) ptxC phosphonate transport system permease PtxC
?NC_002947 = 965474 34 (0.700)coding (456/768 nt) ptxC phosphonate transport system permease PtxC

TTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTG  >  NC_002947/965307‑965596
                                                                                                                                                    |                                                                                                                                              
ttGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt                                                                                                                                               <  7:5953/149‑1 (MQ=255)
    aaGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgtttgttt                                                                                                                                           >  2:159440/1‑149 (MQ=255)
     aGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCTACCGATGACTGTGCTGGCGGATGGGATGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGATGCCGTGCTGGGGCgtttgttt                                                                                                                                           >  1:252236/1‑149 (MQ=255)
      ggggCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc                                                                                                                                         <  2:58640/149‑1 (MQ=255)
          ccGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg                                                                                                                                     <  6:60911/149‑1 (MQ=255)
          ccGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACGGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg                                                                                                                                     <  8:182343/149‑1 (MQ=255)
           cgcgcgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAgg                                                                                                                                    >  1:170088/1‑149 (MQ=255)
              gcgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgcgc                                                                                                                                 <  3:27790/149‑1 (MQ=255)
               cgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGTGGCGTTTGTTTGCCGAGGCGCt                                                                                                                                <  3:219046/149‑1 (MQ=255)
                   ggcggctCAATGCCTTGCGGGCCATTCCTCAACTGGTGTGGGCCCCGCGGACGGTGCGGCCGGCGGGGCTGGGGCCGAAGCCCGGTACCCGGGCTGTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTga                                                                                                                             <  1:247875/144‑1 (MQ=255)
                      tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc                                                                                                                                         <  4:312540/133‑1 (MQ=255)
                      tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc                                                                                                                                         >  3:312540/1‑133 (MQ=255)
                      tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgc                                                                                                                                   >  3:7761/1‑139 (MQ=255)
                      tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgc                                                                                                                                   <  4:7761/139‑1 (MQ=255)
                                cTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGTGTTTGTTTGCCGAGgc                                                                                                                                   <  3:92780/129‑1 (MQ=255)
                                cTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGAGTTTGTTTGCCGAGgc                                                                                                                                   >  4:92780/1‑129 (MQ=255)
                                      tGCCATTCCTGCACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCcgg                                                                                                         <  4:65772/149‑1 (MQ=255)
                                        ccATTCCTGAACTGGTGTGGGGTTCGCTGACTGTGGATGCGGCTGGGCTGGGGCGGAATGCGGGTACCCTGGCTGTGGCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCGCCGCCCGAGCcggc                                                                                                        <  5:103689/148‑1 (MQ=255)
                                          aTTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCcggcggc                                                                                                     >  3:160518/1‑149 (MQ=255)
                                              cTGAACTGTTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccccagcacgccagcggt                                                                                                      <  5:323405‑M1/144‑43 (MQ=255)
                                              cTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCGTGGGGGTTataaagcgccacggcaaaaaaacgccccagcacgccaccggtgaga                                                                                                  >  6:323405‑M1/1‑102 (MQ=255)
                                               tGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg                                                                                                                                     >  5:275415/1‑112 (MQ=255)
                                               tGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg                                                                                                                                     <  6:275415/112‑1 (MQ=255)
                                                      gtgtGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGATCGCCCCGCCCGAGCCGGCGGCGGCGATCCGttt                                                                                         >  4:258107/1‑149 (MQ=255)
                                                       tgtgGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt                                                                                                                                               <  7:134912/94‑1 (MQ=255)
                                                       tgtgGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt                                                                                                                                               >  8:134912/1‑94 (MQ=255)
                                                               aGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAggggg                                                                                 >  8:237189/1‑149 (MQ=255)
                                                               aGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAggggg                                                                                 <  6:52882/149‑1 (MQ=255)
                                                                    tGACTGTGCTGGCGGCTGGGCGGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGc                                                                            <  2:252236/149‑1 (MQ=255)
                                                                           gCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTgg                                                                     >  2:312169/1‑149 (MQ=255)
                                                                            cTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggc                                                                    >  6:225881/1‑149 (MQ=255)
                                                                               gcggcTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcggc                                                                 <  3:222186/149‑1 (MQ=255)
                                                                                    tgggctgggGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccc                                                                                                                     <  5:313949‑M1/92‑28 (MQ=255)
                                                                                    tgggctgggGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccc                                                                                                                     >  6:313949‑M1/1‑65 (MQ=255)
                                                                                           gggCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTg                                                      <  4:143642/148‑1 (MQ=255)
                                                                                                          aCCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCt                                      >  6:328463/1‑149 (MQ=255)
                                                                                                              tGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTgg                                                     >  1:258936/1‑130 (MQ=255)
                                                                                                              tGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTgg                                                     <  2:258936/130‑1 (MQ=255)
                                                                                                                gCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGc                                 <  5:285060/148‑1 (MQ=255)
                                                                                                                 cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcggc                                                                 >  2:193929/1‑115 (MQ=255)
                                                                                                                 cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcgg                                                                  >  1:115190/1‑114 (MQ=255)
                                                                                                                 cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcgg                                                                  <  2:115190/114‑1 (MQ=255)
                                                                                                                      gCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGt                           <  3:258107/148‑1 (MQ=255)
                                                                                                                      gCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGtt                          <  1:312169/149‑1 (MQ=255)
                                                                                                                      gCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGtt                          >  1:25594/1‑149 (MQ=255)
                                                                                                                        gTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGc                        <  4:160518/149‑1 (MQ=255)
                                                                                                                           tctcaccggTGGCGTGCTGGGGCGTTTTTTTGCCGTGGCGCTTTATaacccccacgcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagcccagccgccagcacagtcagcgctgcccacaccagttcag                      >  6:323405‑M2/4‑46 (MQ=255)
                                                                                                                           gCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCt                       <  5:315437/147‑1 (MQ=255)
                                                                                                                           gCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCt                       >  6:315437/1‑147 (MQ=255)
                                                                                                                               acCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagcccagccgccagcacagtcagcgctgcccacaacagttcag                      <  5:323405‑M2/144‑103 (MQ=255)
                                                                                                                               acCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTa                 <  2:170088/149‑1 (MQ=255)
                                                                                                                                 cGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTa                 >  1:19722/1‑147 (MQ=255)
                                                                                                                                    tGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCt            >  2:220567/1‑149 (MQ=255)
                                                                                                                                              gggCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagccca                                                           >  6:313949‑M2/1‑27 (MQ=255)
                                                                                                                                              gggCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagccca                                                           <  5:313949‑M2/92‑66 (MQ=255)
                                                                                                                                              gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTg  <  5:328463/149‑1 (MQ=255)
                                                                                                                                              gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGGTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTg  <  5:225881/149‑1 (MQ=255)
                                                                                                                                              gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGAAGGGGGGCAGCCAGTTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACATGTGGCCGAAGTTGCTGGACTACAGCATGAACCGcag  >  4:47021/1‑147 (MQ=255)
                                                                                                                                                    |                                                                                                                                              
TTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCAGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTG  >  NC_002947/965307‑965596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.