New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 965454 | 45 (0.860) | 4 (0.080) | 4/250 | NT | 9.5% | coding (436/768 nt) | ptxC | phosphonate transport system permease PtxC |
? | NC_002947 | = 965474 | 34 (0.700) | coding (456/768 nt) | ptxC | phosphonate transport system permease PtxC |
TTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTG > NC_002947/965307‑965596 | ttGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt < 7:5953/149‑1 (MQ=255) aaGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgtttgttt > 2:159440/1‑149 (MQ=255) aGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGCTACCGATGACTGTGCTGGCGGATGGGATGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGATGCCGTGCTGGGGCgtttgttt > 1:252236/1‑149 (MQ=255) ggggCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc < 2:58640/149‑1 (MQ=255) ccGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg < 6:60911/149‑1 (MQ=255) ccGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACGGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg < 8:182343/149‑1 (MQ=255) cgcgcgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAgg > 1:170088/1‑149 (MQ=255) gcgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgcgc < 3:27790/149‑1 (MQ=255) cgTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGTGGCGTTTGTTTGCCGAGGCGCt < 3:219046/149‑1 (MQ=255) ggcggctCAATGCCTTGCGGGCCATTCCTCAACTGGTGTGGGC‑CCCGCGGACGGTGCGGCCGGCGGGGCTGGGGCCGAAGCCCGGTACCCGGGCTGTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTga < 1:247875/144‑1 (MQ=255) tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc < 4:312540/133‑1 (MQ=255) tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGc > 3:312540/1‑133 (MQ=255) tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgc > 3:7761/1‑139 (MQ=255) tgctCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGgc < 4:7761/139‑1 (MQ=255) cTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGTGTTTGTTTGCCGAGgc < 3:92780/129‑1 (MQ=255) cTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGAGTTTGTTTGCCGAGgc > 4:92780/1‑129 (MQ=255) tGCCATTCCTGCACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCcgg < 4:65772/149‑1 (MQ=255) ccATTCCTGAACTGGTGTGGGG‑TTCGCTGACTGTGGATGCGGCTGGGCTGGGGCGGAATGCGGGTACCCTGGCTGTGGCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCGCCGCCCGAGCcggc < 5:103689/148‑1 (MQ=255) aTTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCcggcggc > 3:160518/1‑149 (MQ=255) cTGAACTGTTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccccagcacgccagcggt < 5:323405‑M1/144‑43 (MQ=255) cTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCGTGGGGGTTataaagcgccacggcaaaaaaacgccccagcacgccaccggtgaga > 6:323405‑M1/1‑102 (MQ=255) tGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg > 5:275415/1‑112 (MQ=255) tGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAg < 6:275415/112‑1 (MQ=255) gtgtGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGATCGCCCCGCCCGAGCCGGCGGCGGCGATCCGttt > 4:258107/1‑149 (MQ=255) tgtgGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt < 7:134912/94‑1 (MQ=255) tgtgGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCgttt > 8:134912/1‑94 (MQ=255) aGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAggggg > 8:237189/1‑149 (MQ=255) aGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAggggg < 6:52882/149‑1 (MQ=255) tGACTGTGCTGGCGGCTGGGCGGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGc < 2:252236/149‑1 (MQ=255) gCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTgg > 2:312169/1‑149 (MQ=255) cTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggc > 6:225881/1‑149 (MQ=255) gcggcTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcggc < 3:222186/149‑1 (MQ=255) tgggctgggGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccc < 5:313949‑M1/92‑28 (MQ=255) tgggctgggGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTctcaagcgcctcggcaaacaaacgccc > 6:313949‑M1/1‑65 (MQ=255) gggCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTg < 4:143642/148‑1 (MQ=255) aCCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCt > 6:328463/1‑149 (MQ=255) tGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTgg > 1:258936/1‑130 (MQ=255) tGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTgg < 2:258936/130‑1 (MQ=255) gCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGc < 5:285060/148‑1 (MQ=255) cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcggc > 2:193929/1‑115 (MQ=255) cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcgg > 1:115190/1‑114 (MQ=255) cTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTggcgg < 2:115190/114‑1 (MQ=255) gCGTTGCTCACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGt < 3:258107/148‑1 (MQ=255) gCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGtt < 1:312169/149‑1 (MQ=255) gCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGtt > 1:25594/1‑149 (MQ=255) gTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGc < 4:160518/149‑1 (MQ=255) tctcaccggTGGCGTGCTGGGGCGTTTTTTTGCCGTGGCGCTTTATaacccccacgcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagcccagccgccagcacagtcagcgctgcccacaccagttcag > 6:323405‑M2/4‑46 (MQ=255) gCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCt < 5:315437/147‑1 (MQ=255) gCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCt > 6:315437/1‑147 (MQ=255) acCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagcccagccgccagcacagtcagcgctgcccacaacagttcag < 5:323405‑M2/144‑103 (MQ=255) acCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTa < 2:170088/149‑1 (MQ=255) cGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTa > 1:19722/1‑147 (MQ=255) tGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCt > 2:220567/1‑149 (MQ=255) gggCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagccca > 6:313949‑M2/1‑27 (MQ=255) gggCGTTTGTTTGCCGAGGCGCTTGAGaacgccccagcacgccagcggtgtgcaacgccaaagccagggtaccggcattcggccccagccca < 5:313949‑M2/92‑66 (MQ=255) gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTg < 5:328463/149‑1 (MQ=255) gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGGTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTg < 5:225881/149‑1 (MQ=255) gggCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGAAGGGGGGCAGCCAGTTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACATGTGGCCGAAGTTGCTGGACTACAGCATGAACCGcag > 4:47021/1‑147 (MQ=255) | TTGCAAGGGGCCGCGCGTTTGCTGCTCAATGCCTTGCGTGCCATTCCTGAACTGGTGTGGGC‑AGCGCTGACTGTGCTGGCGGCTGGGCTGGGGCCGAATGCCGGTACCCTGGCTTTGGCGTTGCACACCGCTGGCGTGCTGGGGCGTTTGTTTGCCGAGGCGCTTGAGAACGCCCCGCCCGAGCCGGCGGCGGCGATCCGTTTGCAGGGGGGCAGCCAGGTGGCGGCGTTCTGCTTTGGTACCCTGCCCAACCTGTGGCCGCAGTTGCTGGCCTACAGCTTGTACCGCTG > NC_002947/965307‑965596 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |