New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1195376	40 (0.770)	4 (0.080)	4/248	NT	9.5%	coding (1515/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	= 1195402	39 (0.800)					coding (1541/1653 nt)	uxpA	lipoprotein UxpA

CGGTGACCCGCTGCTGCTGGACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195220‑1195376 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaggccTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGCGGCA  <  NC_002947/1195402‑1195255                                                                                                                                                                                                                                                                                                                   CGGTGCCCCGCGCCCGCGGGACACCCGCCAGCACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGGCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAA                                                                                                                                                              <  4:202252/149‑1  GGTGACCCGCTGCTGCTGGACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAA                                                                                                                                                              <  5:24127/148‑1  GGTGACCCGCTGCTGCTGGACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAA                                                                                                                                                              <  8:82745/148‑1        CCGCTGCTGCTGGACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGC                                                                                                                                                       <  3:22557/149‑1                    GACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCTCGACCCGCTG                                                                                                                                           >  3:299367/1‑149                                         CGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTG                                                                                                                      <  2:270011/149‑1                                          GCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGG                                                                                                                     <  3:10828/149‑1                                              GCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTT                                                                                                                 <  4:299367/149‑1                                                                                                                                                       CCAGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGC        >  7:75959/1‑149                                                                                                                                                         AGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGC      <  3:42793/149‑1                                                                                                                                                         AGGCCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCATTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGC      <  1:226406/149‑1                                                                                                                                                            CCTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGCGG    >  4:285978/1‑148                                                                                                                                                             CTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGCGGCA  <  5:13927/149‑1                                                                                                                                                             CTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGCGG    >  1:45786/1‑147                                                                                                                                                                                                                                                                                                                   CGGTGACCCGCTGCTGCTGGACAACAGCCAGGACCTGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195220‑1195376 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaggccTCGACCCGCTGCCACAGTGGCTCGCCGGCCTGGCTTTCGAACTGCAGGCCAAAGGTGCGGCACAGGCCCTGCACCGGCTCCAACCCCGTGATGCGCTTGCCTTGCGGGCTGTAGCTGACGCTCCAGGCCTGGCCCTGCCAGCGCGGCA  <  NC_002947/1195402‑1195255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.