New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1195376	40 (0.770)	4 (0.080)	4/248	NT	9.5%	coding (1515/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	= 1195402	39 (0.800)					coding (1541/1653 nt)	uxpA	lipoprotein UxpA

TGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCGGTGCTGGC  >  NC_002947/1195255‑1195546                                                                                                                                                    |                                                                                                                                                 tGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAg                                                                                                                                                 <  5:13927‑M2/149‑2 (MQ=255)   ccGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAgg                                                                                                                                                >  4:285978‑M2/1‑146 (MQ=255)   ccGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAg                                                                                                                                                 >  1:45786‑M2/1‑146 (MQ=255)     gcgcTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAATGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcct                                                                                                                                             <  1:226406‑M2/149‑6 (MQ=255)     gcgcTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcct                                                                                                                                             <  3:42793‑M2/149‑6 (MQ=255)       gcTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcctgg                                                                                                                                           >  7:75959‑M2/1‑142 (MQ=255)          ggCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCCAGGCAAGCGCATCACGGGGGTGGCGCCGGTGCAGGGACGGTGACGCACCTTTGGCCTGCAGTTCGAAAGCCCGGCCGGCGAGCCCCTGTGGCAGCGGGTCGCGGCCTGGCTc                                                                                                                                        >  7:142417/1‑149 (MQ=255)               ggCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTcgcccg                                                                                                                                   >  1:229450/1‑149 (MQ=255)               ggCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCAGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTcgcccg                                                                                                                                   >  4:184037/1‑149 (MQ=255)                     gCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGcc                                                                                                                             <  5:314481/149‑1 (MQ=255)                                 aGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGc                                                                                                                  >  2:270679/1‑148 (MQ=255)                                      cAGCCCGCAAGGCATGCGCATCCCGGGGTTGGCGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACt                                                                                                              <  1:327253/147‑1 (MQ=255)                                         cccGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGgcgc                                                                                                         <  2:226406/149‑1 (MQ=255)                                            gcaaggcaagCGCATCTCGGGGTTGGAGCGGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCATTTCGAAAGCCAGGCGGGCGAGCCACTGTGGCAGCGGGTCTAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGcgccgc                                                                                                      <  6:51700/149‑1 (MQ=255)                                            gcaaggcaagCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGa                                                                                                                          >  6:241375/1‑129 (MQ=255)                                            gcaaggcaagCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGa                                                                                                                          <  5:241375/129‑1 (MQ=255)                                               aggcaagCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGc                                                                                                   <  5:233103/149‑1 (MQ=255)                                                ggcaagCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGc                                                                                                   >  4:163173/1‑148 (MQ=255)                                                     gcgcATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGc                                                                                             <  8:73213/149‑1 (MQ=255)                                                      cgcATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGcc                                                                                            <  3:263424/149‑1 (MQ=255)                                                              ggggTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGc                                                                                    <  1:270679/149‑1 (MQ=255)                                                              ggggTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGc                                                                                    <  4:42793/149‑1 (MQ=255)                                                                ggTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGt                                                                                  >  6:102367/1‑149 (MQ=255)                                                                ggTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGt                                                                                  >  7:146924/1‑149 (MQ=255)                                                                    ggAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTAc                                                                               <  2:229450/148‑1 (MQ=255)                                                                      aGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTg                                                                            >  5:289587/1‑149 (MQ=255)                                                                          ggagCAGGGCCTGGGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAgg                                                                        <  4:80667/146‑1 (MQ=255)                                                                              cAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCa                                                                    <  3:184037/149‑1 (MQ=255)                                                                                 ggCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCAccc                                                                 <  8:146924/149‑1 (MQ=255)                                                                                         ccGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTgg                                                          <  7:138922/148‑1 (MQ=255)                                                                                           gCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCAc                                                       >  8:214028/1‑149 (MQ=255)                                                                                               cTTTGGCCTTCAGATAGAACGCCAGGCCGGCTAGCCACTGTGGCAGCGGGTCGAGGCCTTGCTCGCCCGCCAGCCTGAGGATTGTCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCAc                                                   <  8:142417/149‑1 (MQ=255)                                                                                               cTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCAc                                                   <  6:289587/149‑1 (MQ=255)                                                                                                   ggCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGc                                                <  5:102367/148‑1 (MQ=255)                                                                                                    gCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCaa                                              >  2:241296/1‑149 (MQ=255)                                                                                                     ccTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAgg                                                                        <  4:29903/122‑1 (MQ=255)                                                                                                     ccTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAgg                                                                        >  3:29903/1‑122 (MQ=255)                                                                                                       tGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGc                                                                           <  1:41757/117‑1 (MQ=255)                                                                                                       tGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGc                                                                           >  2:41757/1‑117 (MQ=255)                                                                                                            ttCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCa                                                        <  3:124202/131‑1 (MQ=255)                                                                                                            ttCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCa                                                        >  4:124202/1‑131 (MQ=255)                                                                                                                aaaGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcctggctttcgaactgcaggccaaaggtgcggcacaggccctgcaccggctccaaccccgtgatgcgcttgccttgcgggctgtagctgacgctccaggcctggccctgc                                  <  4:299367‑M2/149‑113 (MQ=255)                                                                                                                    ccAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcctggctttcgaactgcaggccaaaggtgcggcacaggccctgcaccggctccaaccccgtgatgcgcttgccttgcgggctgtagctgacgctccaggcctggccctgccagc                              <  3:10828‑M2/149‑117 (MQ=255)                                                                                                                     cAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAggcctggctttcgaactgcaggccaaaggtgcggcacaggccctgcaccggctccaaccccgtgatgcgcttgccttgcgggctgtagctgacgctccaggcctggccctgccagcg                             <  2:270011‑M2/149‑118 (MQ=255)                                                                                                                          cGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTc                        >  1:246742/1‑149 (MQ=255)                                                                                                                                 ccACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTg                 >  4:301419/1‑149 (MQ=255)                                                                                                                                         gCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCg          <  3:301419/148‑1 (MQ=255)                                                                                                                                          cAGCGGGTCGAggcctggctttcgaactgcaggccaaaggtgcggcacaggccctgcaccggctccaaccccgtgatgcgcttgccttgcgggctgtagctgacgctccaggcctggccctgccagcgcggcaggtcctggctgttgtc        >  3:299367‑M2/1‑11 (MQ=255)                                                                                                                                           aGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCGGTg       >  4:108526/1‑149 (MQ=255)                                                                                                                                             cGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCATCTGCTCACCGGTGCt     >  7:162176/1‑149 (MQ=255)                                                                                                                                                gTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCGGTGCTGGc  <  6:13927/149‑1 (MQ=255)                                                                                                                                                gTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCGGTGCTGGc  <  5:316642/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TGCCGCGCTGGCAGGGCCAGGCCTGGAGCGTCAGCTACAGCCCGCAAGGCAAGCGCATCACGGGGTTGGAGCCGGTGCAGGGCCTGTGCCGCACCTTTGGCCTGCAGTTCGAAAGCCAGGCCGGCGAGCCACTGTGGCAGCGGGTCGAGGCCTGGCTCGCCCGCCAGCCTGAGGATTGGCAACTGGCGCCGCTGCAACTGCCCGAAGTGCGTTACGTGCAGGGGCACCCAGGCTGGCACCCACGGCAATTGGCCTCGTGATGCTCACCTCGCGTCTGCTCACCGGTGCTGGC  >  NC_002947/1195255‑1195546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.