| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1196535 = | 63 (1.210) | 3 (0.060) | 3/250 | NT | 5.2% | coding (596/1755 nt) | xcpQ | type II secretion pathway protein XcpQ |
| ? | NC_002947 | 1196595 = | 50 (1.020) | coding (656/1755 nt) | xcpQ | type II secretion pathway protein XcpQ | |||||
CCCGAGCCACCGGCGGCTGGCACCACCGGCCGGTCCTTGCCCTCTGCCTCACCCGCGCCTTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1196688‑1196535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCC > NC_002947/1196595‑1196740 CCCGAGCCACCGGCGGCTGGCACCACCGGCCGGTCCTTGCCCTCTGCCTCACCCGCGCCTTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGT < 2:300870/149‑1 GCCACCGGCGGCTGGCACCACCGGCCGGTCCTTGCCCTCTGCCTCACCCGCGCCTTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGTGCTGC < 6:47710/149‑1 TCGCAGCACCTTGACCACTTCGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTG > 4:181537/1‑149 CAGCACCTTGACCACTTCGCCGGCATTGGCATGGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGC > 1:44233/1‑149 CGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGA < 2:44233/148‑1 GCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCC > 5:287289/1‑148 GCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCC > 6:77794/1‑148 CCCGAGCCACCGGCGGCTGGCACCACCGGCCGGTCCTTGCCCTCTGCCTCACCCGCGCCTTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCAT‑GGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1196688‑1196535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCC > NC_002947/1196595‑1196740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |