New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1312668 =	52 (1.000)	4 (0.080)	4/248	NT	7.1%	coding (1989/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	1312776 =	56 (1.150)					coding (1881/2847 nt)	rapA	RNA polymerase‑associated protein RapA

AACGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1312820‑1312668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAG  >  NC_002947/1312776‑1312919                                                                                                                                                                                                                                                                                                           AACGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCG                                                                                                                                                       >  6:30365/1‑148  ACGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAA                                                                                                                                                     <  5:30365/149‑1  ACGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAA                                                                                                                                                     <  7:67200/149‑1   CGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCGGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAAC                                                                                                                                                    <  6:261894/149‑1    GCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACT                                                                                                                                                   <  6:141370/149‑1    GCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACT                                                                                                                                                   <  6:151632/149‑1                                            ACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGG                                                                                                             >  2:161563/1‑147                                                GTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCG                                                                                                       >  2:237470/1‑149                                                                CTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGG                                                                                        <  1:237470/148‑1                                                                         CTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTG                                                                                <  1:161563/147‑1                                                                                                                                                  CCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTC     <  6:8137/149‑1                                                                                                                                                     AACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAG  >  2:243545/1‑149                                                                                                                                                                                                                                                                                                           AACGCCTTCCTCAACACCTGCCCCACCGGCAATGCCCTGCAGCACCAGTTCGGCCCACGCCTGCTGCCGCTGCTCGAAGGCGGCGAAAACAAGGCCTGGGATACCCTGGTGGCCGACGCCCGCAGCGAACGCGAACGCCTGGAAGCCGAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1312820‑1312668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAG  >  NC_002947/1312776‑1312919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.