New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1312668 =	52 (1.000)	4 (0.080)	4/248	NT	7.1%	coding (1989/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	1312776 =	56 (1.150)					coding (1881/2847 nt)	rapA	RNA polymerase‑associated protein RapA

GCCGGAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAG  >  NC_002947/1312629‑1312919                                                                                                                                                      |                                                                                                                                                gccgGAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGt                                                                                                                                                >  3:166514/1‑149 (MQ=255) gccgGAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGt                                                                                                                                                >  5:14437/1‑149 (MQ=255) gccgGAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGt                                                                                                                                                >  3:279112/1‑149 (MQ=255)   cctcaacacctgccccaccggcaatgccctgcagcacCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGt                                                                                                                                                >  2:161563‑M1/38‑147 (MQ=255)     gAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGtgctg                                                                                                                                            <  7:213263/149‑1 (MQ=255)        ttGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAg                                                                                                                                         <  8:39944/149‑1 (MQ=255)               ccAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTg                                                                                                                                  >  2:179542/1‑149 (MQ=255)                   cagGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCgg                                                                                                                              <  7:222861/149‑1 (MQ=255)                    agGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGAGTGGGCCGAACTGGTGCTGCAGGGCATTTCCGGt                                                                                                                             >  7:278656/1‑149 (MQ=255)                      gCGGTCACGGCGAGTGTTCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGGCACGAGTGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCTAACTGGTGCTGCAGGGCATTGCCGGTgg                                                                                                                           <  7:189679/149‑1 (MQ=255)                      gCGGGCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTgg                                                                                                                           <  8:252695/149‑1 (MQ=255)                          tCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTgggg                                                                                                                         >  2:199681/1‑147 (MQ=255)                            aCGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAgg                                                                                                                     >  7:78922/1‑149 (MQ=255)                                ccAGTGTGCAGTTCGGATTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGACACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGtt                                                                                                                 >  8:174521/1‑149 (MQ=255)                                  aGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGa                                                                                                               <  7:240680/149‑1 (MQ=255)                                        accagttcggcccacgcctgctgccgctgctcgaaggcggcgaaaacaaggcctgggataccctggtggccgacgcccgcagcgaacgcgaacgcctggaagccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAgg                                                                                                             >  2:161563‑M2/111‑147 (MQ=255)                                         AGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGc                                                                                                        <  6:141370‑M1/149‑1 (MQ=255)                                         AGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGc                                                                                                        <  6:151632‑M1/149‑1 (MQ=255)                                          GTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCCGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCg                                                                                                       <  6:261894‑M1/149‑1 (MQ=255)                                           TTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGt                                                                                                      <  5:30365‑M1/149‑1 (MQ=255)                                           TTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGt                                                                                                      <  7:67200‑M1/149‑1 (MQ=255)                                            gttcggcccacgcctgctgccgctgctcgaaggcggcgaaaacaaggcctgggataccctggtggccgacgcccgcagcgaacgcgaacgcctggaagccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCg                                                                                                       >  2:237470‑M2/107‑149 (MQ=255)                                             CGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGtt                                                                                                     >  6:30365‑M1/1‑148 (MQ=255)                                                    cAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCtt                                                                                             <  6:222577/149‑1 (MQ=255)                                                    cAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCtt                                                                                             >  6:131846/1‑149 (MQ=255)                                                     aGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGCTACGCGTTCGAGCAGCGGCTGAAGGCGTGGGCCGAAGTGGTGATGCAGGGAATTCCCGTTGGGGAAGGGGTGGAGGAAGCCTTTGAcccgt                                                                                              >  1:93820/1‑147 (MQ=255)                                                     aGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTc                                                                                            >  5:8137/1‑149 (MQ=255)                                                     aGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTc                                                                                            >  1:298120/1‑149 (MQ=255)                                                       gcgttcgcgttcGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGt                                                                                          <  6:41280/149‑1 (MQ=255)                                                        cgttcgcgttcgCTGCGGTCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTg                                                                                         <  3:218755/149‑1 (MQ=255)                                                           tcgcgttcgcTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTa                                                                                      >  7:227860/1‑149 (MQ=255)                                                            ctgccgctgctcgaaggcggcgaaaacaaggcctgggataccctggtggccgacgcccgcagcgaacgcgaacgcctggaagccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTgg                                                                                        <  1:237470‑M2/58‑1 (MQ=255)                                                                   gcTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGa                                                                              <  5:90127/149‑1 (MQ=255)                                                                    cTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGaa                                                                             <  2:172996/149‑1 (MQ=255)                                                                     ctcgaaggcggcgaaaacaaggcctgggataccctggtggccgacgcccgcagcgaacgcgaacgcctggaagccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTg                                                                                <  1:161563‑M2/66‑1 (MQ=255)                                                                       cGGGCGTCGGCCACCAGGGTATCCCAGGCGTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAg                                                                          <  4:166514/149‑1 (MQ=255)                                                                          gCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGAGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGgcg                                                                       <  3:181078/149‑1 (MQ=255)                                                                           cGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGgcgc                                                                      <  8:69683/149‑1 (MQ=255)                                                                               ggCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCtt                                                                  <  6:14437/149‑1 (MQ=255)                                                                                tccaccaGTGTATCCCAGGCCTTGTTTTCGC‑‑CTCCTTCGTGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTTCCTGTGGGGCAGGTGTTGAGGAAGGCGTTTAGCCCTTCGTGGTACCACTGGAACAGTCGCTCTTg                                                                 <  2:298120/148‑1 (MQ=255)                                                                                gCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTg                                                                 >  4:90645/1‑149 (MQ=255)                                                                                   accaGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCgg                                                              <  5:141370/149‑1 (MQ=255)                                                                                         gTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTc                                                        <  8:227860/149‑1 (MQ=255)                                                                                         gTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTc                                                        <  1:9205/149‑1 (MQ=255)                                                                                              cctggCCGTGTTTTCGC‑‑CGCCTTCGAGTAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACGACTGGAACAGGCGCTCTTGCGGGCTGTGCTGCa                                                   <  4:279112/146‑1 (MQ=255)                                                                                                   ccTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTAc                                              <  5:131846/149‑1 (MQ=255)                                                                                                    cTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACg                                             >  1:152465/1‑149 (MQ=255)                                                                                                     ttGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGc                                                    >  8:101835/1‑141 (MQ=255)                                                                                                     ttGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGc                                                    <  7:101835/141‑1 (MQ=255)                                                                                                        ttttCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAt                                         <  1:199681/149‑1 (MQ=255)                                                                                                        ctgctgc‑‑cgccTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAt                                         >  6:310833/6‑149 (MQ=255)                                                                                                            cgc‑‑cgcCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACg                                             <  5:312680/141‑1 (MQ=255)                                                                                                            cgc‑‑cgcCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACg                                             >  6:312680/1‑141 (MQ=255)                                                                                                             gc‑‑cgccTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGc                                     <  5:261894/148‑1 (MQ=255)                                                                                                                  gccTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACt                                 <  7:174521/149‑1 (MQ=255)                                                                                                                   ccTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAtgt                                       <  5:83307/142‑1 (MQ=255)                                                                                                                   ccTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAtgt                                       >  6:83307/1‑142 (MQ=255)                                                                                                                     ttCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGa                              >  4:113750/1‑149 (MQ=255)                                                                                                                        gAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAtgt                                       >  1:209504/1‑137 (MQ=255)                                                                                                                        gAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGAtgt                                       <  2:209504/137‑1 (MQ=255)                                                                                                                         agcagcGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAgt                          <  5:201297/149‑1 (MQ=255)                                                                                                                           cagcGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAgtgt                        <  3:90645/149‑1 (MQ=255)                                                                                                                              cGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAgtgt                        >  6:323867/1‑146 (MQ=255)                                                                                                                              cGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAgtgt                        <  5:323867/146‑1 (MQ=255)                                                                                                                                 cagcagGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCggg                                                             >  7:202897/1‑106 (MQ=255)                                                                                                                                 cagcagGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCggg                                                             <  8:202897/106‑1 (MQ=255)                                                                                                                                  agcagGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTg                 >  2:264216/1‑149 (MQ=255)                                                                                                                                    cagGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTATCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGc               <  1:264216/149‑1 (MQ=255)                                                                                                                                       gCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGa            >  5:104368/1‑149 (MQ=255)                                                                                                                                       gCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGa            >  7:304870/1‑149 (MQ=255)                                                                                                                                         gTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATc          >  4:124122/1‑149 (MQ=255)                                                                                                                                          tGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATcc         <  3:113750/149‑1 (MQ=255)                                                                                                                                              ccgaactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTc     <  6:8137‑M2/141‑1 (MQ=255)                                                                                                                                                 aactgGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAg  >  2:243545‑M2/6‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                GCCGGAATTGAGTTCCAGCAGGCGGTCACGGCCAGTGTGCAGTTCGGCTTCCAGGCGTTCGCGTTCGCTGCGGGCGTCGGCCACCAGGGTATCCCAGGCCTTGTTTTCGC‑‑CGCCTTCGAGCAGCGGCAGCAGGCGTGGGCCGAACTGGTGCTGCAGGGCATTGCCGGTGGGGCAGGTGTTGAGGAAGGCGTTGAGCCCTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAG  >  NC_002947/1312629‑1312919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.