New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1404731 =	46 (0.880)	3 (0.060)	3/252	NT	6.5%	coding (951/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	1404824 =	43 (0.870)					coding (858/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer

GGCAACAGTCGCGACGACAGCGTGCTCGGCAAGCCCATGGACAAGTCGGTAGCCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1404880‑1404731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG  >  NC_002947/1404824‑1404967                                                                                                                                                                                                                                                                                                        GGCAACAGTCGCGACGACAGCGTGCTCGGCAAGCCCATGGACAAGTCGGTAGCCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGC                                                                                                                                                   >  6:170257/1‑149  GCAACAGTCGCGACGACAGCGTGCTCGGCAAGCCCATGGACAAGTCGGTAGCCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCC                                                                                                                                                  >  1:32968/1‑149                                                     CCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTG                                                                                                          >  3:38352/1‑138                                                     CCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTG                                                                                                          <  4:38352/138‑1                                                                   CGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAG                                                                                   >  7:151141/1‑147                                                                                                                                                  AGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG  >  3:293011/1‑149                                                                                                                                                  AGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG  <  6:136604/149‑1                                                                                                                                                  AGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG  >  7:181769/1‑149                                                                                                                                                                                                                                                                                                        GGCAACAGTCGCGACGACAGCGTGCTCGGCAAGCCCATGGACAAGTCGGTAGCCGACGGCCTGCTGCGCGTGGCCCACCCCTTCACGCCAATCCCTGACACAGCCCCGTGGCAGGTAGTGCTGGAACTGCCGGAAAGCGTGCTGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1404880‑1404731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG  >  NC_002947/1404824‑1404967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.