New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1404731 =	46 (0.880)	3 (0.060)	3/252	NT	6.5%	coding (951/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	1404824 =	43 (0.870)					coding (858/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer

ACGGCCAGGATTGGCCGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGC  >  NC_002947/1404585‑1404879                                                                                                                                                   |                                                                                                                                                      aCGGCCAGGATTGGCCGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGc                                                                                                                                                     >  8:306096/1‑149 (MQ=255)   ctgcagcaactgagcgtgaacggccgccgcgatctgttcgacggccagggccaggtgagcatcgccaccgccgccggcctgctggccggcaacagtcgcgacgacagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑t                                                                                                                                                  <  6:136604‑M1/5‑1 (MQ=255)   ctgcagcaactgagcgtgaacggccgccgcgatctgttcgacggccagggccaggtgagcatcgccaccgccgccggcctgctggccggcaacagtcgcgacgacagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑t                                                                                                                                                  >  3:293011‑M1/145‑149 (MQ=255)   ctgcagcaactgagcgtgaacggccgccgcgatctgttcgacggccagggccaggtgagcatcgccaccgccgccggcctgctggccggcaacagtcgcgacgacagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑t                                                                                                                                                  >  7:181769‑M1/145‑149 (MQ=255)     ccAGGATTGGCCGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑Tg                                                                                                                                                 >  8:138340/1‑148 (MQ=255)         gATTGGCCGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑Tgcagca                                                                                                                                            <  3:15785/149‑1 (MQ=255)                cGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTc                                                                                                                                     <  1:261925/149‑1 (MQ=255)                 gggTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGGTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTcc                                                                                                                                    >  8:207054/1‑149 (MQ=255)                   gTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCgg                                                                                                                                  <  7:306096/149‑1 (MQ=255)                    tAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCgg                                                                                                                                  >  4:79079/1‑148 (MQ=255)                         ccgcGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTc                                                                                                                            >  8:277036/1‑149 (MQ=255)                          cgcgcgcgGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTcc                                                                                                                           <  8:64282/149‑1 (MQ=255)                          cgcgcgcgGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTc                                                                                                                            >  4:199998/1‑148 (MQ=255)                           gcgcgcgGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCa                                                                                                                          <  6:87685/149‑1 (MQ=255)                           ccgcgcgGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTc                                                                                                                            >  5:170257/2‑147 (MQ=255)                              cgcgGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCa                                                                                                                       <  1:134220/149‑1 (MQ=255)                                 ggTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTa                                                                                                                    >  2:32968/1‑149 (MQ=255)                                     acccACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGCTTATGGCCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCATTCCGGCAGTTCCAGCACTAccag                                                                                                                >  4:34582/3‑147 (MQ=255)                                      gCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGc                                                                                                               >  4:185554/1‑149 (MQ=255)                                                cagcaAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCtg                                                                                                     <  3:16679/149‑1 (MQ=255)                                                       ccGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAgg                                                                                              >  7:245896/1‑149 (MQ=255)                                                        cGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGTGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAggg                                                                                             <  7:61342/149‑1 (MQ=255)                                                              tAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGc                                                                                       <  7:277036/149‑1 (MQ=255)                                                              tAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGc                                                                                       <  3:185554/149‑1 (MQ=255)                                                               aGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGCCAGGGATTGGCg                                                                                      >  4:24292/1‑149 (MQ=255)                                                                   gTGCCAAGTCCTATGAGCAGGGTGGTGAGGTTGGCGTTCTGGTTATGGTCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGGAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGaa                                                                                  <  3:34582/149‑1 (MQ=255)                                                                          ggCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTgg                                                                           <  3:199998/149‑1 (MQ=255)                                                                             cTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGcc                                                                        >  6:54904/1‑149 (MQ=255)                                                                              tATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCa                                                                                                >  1:17467/1‑124 (MQ=255)                                                                              tATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCa                                                                                                <  2:17467/124‑1 (MQ=255)                                                                               aTCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCCTCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTg                                                                                         <  1:222232/130‑1 (MQ=255)                                                                               aTCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTg                                                                                         >  2:222232/1‑130 (MQ=255)                                                                                    ctggccggcaacagtcgcgacgacagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAcgcg                                                                   >  7:151141‑M1/64‑147 (MQ=255)                                                                                         tGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑GGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAgg                                                            <  5:326393/149‑1 (MQ=255)                                                                                              aGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGt                                                        <  7:138340/148‑1 (MQ=255)                                                                                                          tGGTTATGGGCATCACGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGAc                                             <  7:207737/147‑1 (MQ=255)                                                                                                          tGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACtt                                           >  5:136604/1‑149 (MQ=255)                                                                                                          tGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACtt                                           >  3:255818/1‑149 (MQ=255)                                                                                                           cagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCgg                                                     <  4:38352‑M1/98‑1 (MQ=255)                                                                                                           cagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCgg                                                     >  3:38352‑M1/41‑138 (MQ=255)                                                                                                            gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCCCGCGCAGCAGGCCGTCGGCTACCgcc                                             >  8:207737/1‑143 (MQ=255)                                                                                                            gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCg                                                      <  8:90336/136‑1 (MQ=255)                                                                                                            gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCg                                                      >  7:90336/1‑136 (MQ=255)                                                                                                                   gCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATggg                                  >  6:306597/1‑149 (MQ=255)                                                                                                                   gCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGCCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATggg                                  <  3:24292/149‑1 (MQ=255)                                                                                                                       cAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTTGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCtt                               >  1:39708/1‑149 (MQ=255)                                                                                                                        aaGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGc                             <  8:245896/149‑1 (MQ=255)                                                                                                                             gcTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc                        >  2:272041/1‑149 (MQ=255)                                                                                                                                  ttGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCt                   <  4:255818/149‑1 (MQ=255)                                                                                                                                     aGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc                        <  8:184318/141‑1 (MQ=255)                                                                                                                                     aGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc                        >  7:184318/1‑141 (MQ=255)                                                                                                                                      gggCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTgtcg               >  3:194079/1‑149 (MQ=255)                                                                                                                                          gACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTcgc           >  3:264262/1‑149 (MQ=255)                                                                                                                                                   GGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGc  >  1:32968‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      ACGGCCAGGATTGGCCGGGTAACGCCGCGCGCGGTCAGCCACACCAGCAGCAAACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGC  >  NC_002947/1404585‑1404879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.