New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1404731 = | 46 (0.880) | 3 (0.060) | 3/252 | NT | 6.5% | coding (951/2067 nt) | PP_1228 | methyl‑accepting chemotaxis transducer |
? | NC_002947 | 1404824 = | 43 (0.870) | coding (858/2067 nt) | PP_1228 | methyl‑accepting chemotaxis transducer |
AGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG > NC_002947/1404678‑1404967 | aGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGt < 7:138340/148‑1 (MQ=255) tGGTTATGGGCATCACGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGAc < 7:207737/147‑1 (MQ=255) tGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACtt > 3:255818/1‑149 (MQ=255) tGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACtt > 5:136604/1‑149 (MQ=255) cagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCgg < 4:38352‑M1/98‑1 (MQ=255) cagcgtgctcggcaagcccatggacaagtcggtagccgacGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCgg > 3:38352‑M1/41‑138 (MQ=255) gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCCC‑GCGCAGCAGGCCGTCGGCTACCgcc > 8:207737/1‑143 (MQ=255) gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCg < 8:90336/136‑1 (MQ=255) gTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCg > 7:90336/1‑136 (MQ=255) gCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATggg > 6:306597/1‑149 (MQ=255) gCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGCCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATggg < 3:24292/149‑1 (MQ=255) cAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTTGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCtt > 1:39708/1‑149 (MQ=255) aaGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGc < 8:245896/149‑1 (MQ=255) gcTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc > 2:272041/1‑149 (MQ=255) ttGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCt < 4:255818/149‑1 (MQ=255) aGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc > 7:184318/1‑141 (MQ=255) aGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGc < 8:184318/141‑1 (MQ=255) gggCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTgtcg > 3:194079/1‑149 (MQ=255) gACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTcgc > 3:264262/1‑149 (MQ=255) ccgacggcctgctgcgcgtggcccaccccttcacgccaatccctgacacagccccgtggcaggtagtgctggaactgccggaaagcgtgctgcaggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTg < 4:38352‑M2/40‑1 (MQ=255) ccgacggcctgctgcgcgtggcccaccccttcacgccaatccctgacacagccccgtggcaggtagtgctggaactgccggaaagcgtgctgcaggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTg > 3:38352‑M2/99‑138 (MQ=255) GGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGc > 1:32968‑M1/1‑149 (MQ=255) GCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGcc > 6:170257‑M1/1‑149 (MQ=255) cgcgtggcccaccccttcacgccaatccctgacacagccccgtggcaggtagtgctggaactgccggaaagcgtgctgcaggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCcag > 7:151141‑M2/85‑147 (MQ=255) tttCCGGCACTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGATCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGCCcg > 4:258422/1‑149 (MQ=255) cGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcggcgg > 4:95950/1‑149 (MQ=255) aGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGt > 5:299241/1‑149 (MQ=255) aGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGt > 1:323614/1‑149 (MQ=255) ttCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTgg > 8:227579/1‑149 (MQ=255) gtCCAGCACTACCTGCCCCGGGGCTGTGTCAGGGATTGGCGTGAAGGGGGGGGCCAC‑GCGCAGCAGGCCGGCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGGCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTgg < 4:194079/148‑1 (MQ=255) ccAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGGCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGc < 7:207054/148‑1 (MQ=255) cAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGa > 1:288733/1‑149 (MQ=255) cAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGa > 2:229399/1‑149 (MQ=255) gCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATg > 2:300206/1‑149 (MQ=255) cTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTc > 2:211073/1‑149 (MQ=255) aCCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCa > 1:239517/1‑149 (MQ=255) cTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAcct > 2:232422/1‑149 (MQ=255) tGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGt > 4:43391/1‑134 (MQ=255) gggCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAcctggccctgg > 5:156653/1‑149 (MQ=255) cTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCg > 3:164767/1‑149 (MQ=255) tgtgTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCACAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAc > 1:68394/1‑135 (MQ=255) tgtgTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCACAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAc < 2:68394/135‑1 (MQ=255) tCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGaa < 3:79079/149‑1 (MQ=255) gggATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGACTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGaa > 8:208543/1‑146 (MQ=255) gATTGGCGTGAAGTGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGaa > 6:179435/1‑144 (MQ=255) aTTGGCGTGAAGGGGGGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCGGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATc < 3:258422/149‑1 (MQ=255) ggCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATcgcg > 2:135138/1‑149 (MQ=255) aaGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGcc < 2:288733/149‑1 (MQ=255) gTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGTCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCa > 6:182276/1‑149 (MQ=255) gTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCa > 1:44634/1‑149 (MQ=255) cAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCt > 7:249032/1‑147 (MQ=255) cAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCa < 2:44634/149‑1 (MQ=255) cAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCa < 1:229399/149‑1 (MQ=255) cagcagGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTtgct < 1:300206/149‑1 (MQ=255) aggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAg > 7:181769‑M2/6‑149 (MQ=255) aggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAg < 6:136604‑M2/144‑1 (MQ=255) aggccGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAg > 3:293011‑M2/6‑149 (MQ=255) | AGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCC‑TGCAGCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCAC‑GCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAG > NC_002947/1404678‑1404967 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |