New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1415327 =	35 (0.670)	3 (0.060)	3/252	NT	7.5%	coding (600/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	1415401 =	41 (0.830)					coding (674/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase

GTTGGACTCGCAGAACAGGTCCTTGTGCAGCGGCATGAGTTTTTCGTTGATTGCGCGGGCCTTCTCGGCATTGCCCTCAAGGGCGGCCTCGCACAGGTCCGCCATTTCGCGCGGAGCGACGTTGGCGGTGACGGAGATGTTGCCCTTGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1415480‑1415327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGC  >  NC_002947/1415401‑1415541                                                                                                                                                                                                                                                                                                         GTTGGACTCGCAGAACAGGTCCTTGTGCAGCGGCATGAGTTTTTCGTTGATTGCGCGGGCCTTCTCGGCATTGCCCTCAAGGGCGGCCTCGCACAGGTCCGCCATTTCGCGCGGAGCGACGTTGGCGGTGACGGAGATGTTGCCCTTGC                                                                                                                                                    <  7:190597/149‑1   TGGACTCGCAGAACAGGTCCTTGTGCAGCGGCATGAGTTTTTCGTTGATTGCGCGGGCCTTCTCGGCATTGCCCTCAAGGGCGGCCTCGCACAGGTCCGCCATTTCGCGCGGAGCGACGTTGGCGGTGACGGAGATGTTGCCCTTGCCG                                                                                                                                                  <  5:259597/149‑1                                                                           CCTCAAGGGCTGCCTCGCACAGGTCCGCCATTTCGCGCGGATCGACGTTGGCGGTGACGGAGATGTTGCCCTTGCCGCCCTTGAGGGCAATGCCGATAAGGCCCGCGCAATCAAAGAAAAACTCATGACGCTGCACAAGGCCATGTTCT                                                                          >  6:150211/1‑149                                                                            CTCAAGGGCGGCCTCGCACAGGTCCGCCATTTCGCGCGGAGCGACGTTGGCGGTGACGGAGATGTTGCCCTTGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTG                                                                         >  4:108904/1‑149                                                                                           GCACAGGTCCGCCATTTCGCTCGGAGCGACTTTGGCGGTGACGGAGATGTTGCCCTTGCCGCCCTTGATGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGA                                                           <  5:150211/148‑1                                                                                                                                                    GCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGC  >  5:37747/1‑148                                                                                                                                                                                                                                                                                                         GTTGGACTCGCAGAACAGGTCCTTGTGCAGCGGCATGAGTTTTTCGTTGATTGCGCGGGCCTTCTCGGCATTGCCCTCAAGGGCGGCCTCGCACAGGTCCGCCATTTCGCGCGGAGCGACGTTGGCGGTGACGGAGATGTTGCCCTTGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1415480‑1415327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGC  >  NC_002947/1415401‑1415541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.