New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1415327 =	35 (0.670)	3 (0.060)	3/252	NT	7.5%	coding (600/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	1415401 =	41 (0.830)					coding (674/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase

TCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGC  >  NC_002947/1415257‑1415541                                                                                                                                                 |                                                                                                                                              cagaacaggtccttgtgcagcggcatgagtttttcgttgattgcgcgggccttctcggcattgccctcaaGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAg                                                                                                                                           >  4:108904‑M1/71‑149 (MQ=255)  agaacatggccttgtgcagcgtcatgagtttttctttgattgcgcgggccttatcggcattgccctcaaGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGATCCGCGCGAAATGGCGGACCTGTGCGAGGCAGCCCTTGAgg                                                                                                                                          >  6:150211‑M1/70‑149 (MQ=255)             gCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                                                                                                  >  7:276803/1‑146 (MQ=255)               aaGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                                                                                                  <  8:11309/144‑1 (MQ=255)               aaGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                                                                                                  >  7:11309/1‑144 (MQ=255)                aGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAg                                                                                                                            >  6:204979/1‑149 (MQ=255)                 ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGaa                                                                                                                             >  1:240969/1‑147 (MQ=255)                 ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGaa                                                                                                                             <  2:240969/147‑1 (MQ=255)                 ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAgg                                                                                                                           >  3:216086/1‑149 (MQ=255)                            tCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAAt                                                                                                                >  5:306852/1‑148 (MQ=255)                               tGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAAc                                                                                                            <  5:204979/149‑1 (MQ=255)                                   cGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGaa                                                                                                         >  8:110162/1‑148 (MQ=255)                                           acCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATg                                                                                                <  4:216086/149‑1 (MQ=255)                                            cccGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGc                                                                                               <  6:22708/149‑1 (MQ=255)                                                    ccGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGca                                                                                        >  5:96299/1‑148 (MQ=255)                                                         gAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGa                                                                                  <  6:306852/149‑1 (MQ=255)                                                          aGCTTATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGAc                                                                                 <  6:96299/149‑1 (MQ=255)                                                          aGCTGATCCTGATGGTCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGAc                                                                                 <  3:69129/149‑1 (MQ=255)                                                               aTCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGtt                                                                            <  5:283005/149‑1 (MQ=255)                                                                 cctcaagggctgcctcgcacaggtccgccatttcgcgcggatcgacgttggcggtgacggagatgttgcccttgccgcccTTGAGGGCAATGCCGATAAGGCCCGC‑GCAATCAAAGAAAAACTCATGACGCTGCACAAGGCCATGTTCt                                                                          >  6:150211‑M2/81‑149 (MQ=255)                                                                  ctcaagggcggcctcgcacaggtccgccatttcgcgcggagcgacgttggcggtgacggagatgttgcccttgccgcccTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTg                                                                         >  4:108904‑M2/80‑149 (MQ=255)                                                                  cTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCt                                                                          <  8:276803/148‑1 (MQ=255)                                                                     aTGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGa                                                                      <  7:110162/149‑1 (MQ=255)                                                                          CGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCa                                                                 <  5:259597‑M1/149‑1 (MQ=255)                                                                            GCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAAc                                                               <  7:190597‑M1/149‑1 (MQ=255)                                                                                gggCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGa                                                           >  6:264619/1‑149 (MQ=255)                                                                                 gcacaggtccgccatttcgctcggagcgactttggcggtgacggagatgttgcccttgccgcccTTGATGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGa                                                           <  5:150211‑M2/84‑1 (MQ=255)                                                                                  gCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATc                                                         <  5:309978/149‑1 (MQ=255)                                                                                    aaCATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATccc                                                       >  3:172125/1‑149 (MQ=255)                                                                                         ctcCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTg                                                   >  7:135195/1‑148 (MQ=255)                                                                                          gcccttgccGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGa                                                  <  8:134855/141‑1 (MQ=255)                                                                                            cGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑TCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAAt                                               <  3:196222/149‑1 (MQ=255)                                                                                             gTCACCGCAAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATg                                              >  7:210174/1‑149 (MQ=255)                                                                                              tccccGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATgg                                             <  7:288052/146‑1 (MQ=255)                                                                                              tCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCg                                                            <  4:18190/134‑1 (MQ=255)                                                                                              tCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCg                                                            >  3:18190/1‑134 (MQ=255)                                                                                                                cgcgcgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTg                                                                                          <  1:234547/86‑1 (MQ=255)                                                                                                                cgcgcgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTg                                                                                          >  2:234547/1‑86 (MQ=255)                                                                                                                cgcgcgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATgg                             <  4:172125/147‑1 (MQ=255)                                                                                                                 gcgcgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGcc                          >  4:305080/1‑149 (MQ=255)                                                                                                                  cgcgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCt                         <  6:171931/149‑1 (MQ=255)                                                                                                                    cgAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCAGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCt                         >  1:89176/1‑148 (MQ=255)                                                                                                                               aCCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGt            <  6:259597/149‑1 (MQ=255)                                                                                                                                ccTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGaaa                                >  2:183476/1‑128 (MQ=255)                                                                                                                                ccTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGaaa                                <  1:183476/128‑1 (MQ=255)                                                                                                                                ccTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTa           <  8:190597/149‑1 (MQ=255)                                                                                                                                   gtgCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCTCTCGTCGAAATGGGACGGATGCAAAAAGGTATTc        >  8:68004/1‑149 (MQ=255)                                                                                                                                    tgCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTTCGAGTCCAACCCGATCGCGGTGAAATGGGCGCTCGTCGAAATTGGCCTGATGCAAAAAGGTATTc        <  2:112927/148‑1 (MQ=255)                                                                                                                                      cGAGGCCGCCCTTGAGGTCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGc      <  2:89176/148‑1 (MQ=255)                                                                                                                                       gAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCtcgtc                                    <  7:104262/117‑1 (MQ=255)                                                                                                                                       gAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCtcgtc                                    >  8:104262/1‑117 (MQ=255)                                                                                                                                       gAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGct     >  5:265858/1‑147 (MQ=255)                                                                                                                                          gccgcccTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGc  >  5:37747‑M2/8‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                              TCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGC‑GCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGAGTCCAACCCGATCCCGGTGAAATGGGCGCTCGTCGAAATGGGCCTGATGCAAAAAGGTATTCGCCTGC  >  NC_002947/1415257‑1415541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.